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Cluster: HRGMv2_0935_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0935_4 HRGMv2_0935_4_9 6659 7102 + 4.A.6.1.16
pfam HRGMv2_0935_4 HRGMv2_0935_4_10 7102 7383 + YajC
TC HRGMv2_0935_4 HRGMv2_0935_4_11 7420 7902 + 4.A.6.1.4
TC HRGMv2_0935_4 HRGMv2_0935_4_12 7993 8793 + 4.A.6.1.4
TC HRGMv2_0935_4 HRGMv2_0935_4_13 8783 9865 + 4.A.6.1.4
TF HRGMv2_0935_4 HRGMv2_0935_4_14 10051 10782 + GntR
STP HRGMv2_0935_4 HRGMv2_0935_4_15 10897 12063 + SIS | SIS
CAZyme HRGMv2_0935_4 HRGMv2_0935_4_16 12181 13350 + CE9
Gene ID: HRGMv2_0935_4_9
Type: TC
Location: 6659 - 7102 (+)
Gene ID: HRGMv2_0935_4_10
Type: pfam
Location: 7102 - 7383 (+)
Gene ID: HRGMv2_0935_4_11
Type: TC
Location: 7420 - 7902 (+)
Gene ID: HRGMv2_0935_4_12
Type: TC
Location: 7993 - 8793 (+)
Gene ID: HRGMv2_0935_4_13
Type: TC
Location: 8783 - 9865 (+)
Gene ID: HRGMv2_0935_4_14
Type: TF
Location: 10051 - 10782 (+)
Gene ID: HRGMv2_0935_4_15
Type: STP
Location: 10897 - 12063 (+)
Gene ID: HRGMv2_0935_4_16
Type: CAZyme
Location: 12181 - 13350 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0935_4_10 vegan > omnivore 1.09412 0.00701

🧭 Explore Read Mapping of CGC

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