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Cluster: HRGMv2_0934_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0934_54 HRGMv2_0934_54_3 2369 2812 + 4.A.6.1.16
pfam HRGMv2_0934_54 HRGMv2_0934_54_4 2812 3093 + YajC
TC HRGMv2_0934_54 HRGMv2_0934_54_5 3130 3612 + 4.A.6.1.4
TC HRGMv2_0934_54 HRGMv2_0934_54_6 3703 4503 + 4.A.6.1.4
TC HRGMv2_0934_54 HRGMv2_0934_54_7 4493 5575 + 4.A.6.1.4
TF HRGMv2_0934_54 HRGMv2_0934_54_8 5761 6492 + GntR
STP HRGMv2_0934_54 HRGMv2_0934_54_9 6607 7773 + SIS | SIS
CAZyme HRGMv2_0934_54 HRGMv2_0934_54_10 7891 9060 + CE9
Gene ID: HRGMv2_0934_54_3
Type: TC
Location: 2369 - 2812 (+)
Gene ID: HRGMv2_0934_54_4
Type: pfam
Location: 2812 - 3093 (+)
Gene ID: HRGMv2_0934_54_5
Type: TC
Location: 3130 - 3612 (+)
Gene ID: HRGMv2_0934_54_6
Type: TC
Location: 3703 - 4503 (+)
Gene ID: HRGMv2_0934_54_7
Type: TC
Location: 4493 - 5575 (+)
Gene ID: HRGMv2_0934_54_8
Type: TF
Location: 5761 - 6492 (+)
Gene ID: HRGMv2_0934_54_9
Type: STP
Location: 6607 - 7773 (+)
Gene ID: HRGMv2_0934_54_10
Type: CAZyme
Location: 7891 - 9060 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0934_54_4 vegan > omnivore 1.01005 0.00701

🧭 Explore Read Mapping of CGC

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