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Cluster: HRGMv2_0934_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0934_45 HRGMv2_0934_45_4 2297 3673 - GH13_20
TC HRGMv2_0934_45 HRGMv2_0934_45_5 3827 5023 - 2.A.1.2.18
TC HRGMv2_0934_45 HRGMv2_0934_45_6 5144 6334 - 9.A.8.1.6
TC HRGMv2_0934_45 HRGMv2_0934_45_7 6347 7504 - 9.A.8.1.6
peptidase HRGMv2_0934_45 HRGMv2_0934_45_8 7689 8591 - S09.UPW
TC HRGMv2_0934_45 HRGMv2_0934_45_9 8836 9399 + 4.A.1.2.6
pfam HRGMv2_0934_45 HRGMv2_0934_45_10 9580 10983 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0934_45 HRGMv2_0934_45_11 11242 12024 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0934_45 HRGMv2_0934_45_12 12185 13165 + 3.A.1.34.1
TC HRGMv2_0934_45 HRGMv2_0934_45_13 13369 14292 + 3.A.1.34.1
TC HRGMv2_0934_45 HRGMv2_0934_45_14 14285 15079 + 3.A.1.34.1
Gene ID: HRGMv2_0934_45_4
Type: CAZyme
Location: 2297 - 3673 (-)
Gene ID: HRGMv2_0934_45_5
Type: TC
Location: 3827 - 5023 (-)
Gene ID: HRGMv2_0934_45_6
Type: TC
Location: 5144 - 6334 (-)
Gene ID: HRGMv2_0934_45_7
Type: TC
Location: 6347 - 7504 (-)
Gene ID: HRGMv2_0934_45_8
Type: peptidase
Location: 7689 - 8591 (-)
Gene ID: HRGMv2_0934_45_9
Type: TC
Location: 8836 - 9399 (+)
Gene ID: HRGMv2_0934_45_10
Type: pfam
Location: 9580 - 10983 (+)
Gene ID: HRGMv2_0934_45_11
Type:
Location: 11242 - 12024 (+)
Gene ID: HRGMv2_0934_45_12
Type: TC
Location: 12185 - 13165 (+)
Gene ID: HRGMv2_0934_45_13
Type: TC
Location: 13369 - 14292 (+)
Gene ID: HRGMv2_0934_45_14
Type: TC
Location: 14285 - 15079 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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