Cluster: HRGMv2_0931_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0931
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0931_2 | HRGMv2_0931_2_76 | 90624 | 91793 | - | CE9 |
| STP | HRGMv2_0931_2 | HRGMv2_0931_2_77 | 91909 | 93075 | - | SIS | SIS |
| TF | HRGMv2_0931_2 | HRGMv2_0931_2_78 | 93187 | 93921 | - | GntR |
| TC | HRGMv2_0931_2 | HRGMv2_0931_2_79 | 94009 | 94437 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | HRGMv2_0931_2 | HRGMv2_0931_2_80 | 94519 | 95142 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0931_2 | HRGMv2_0931_2_81 | 95331 | 96170 | - | 4.A.6.1.18 |
| TC | HRGMv2_0931_2 | HRGMv2_0931_2_82 | 96160 | 97044 | - | 4.A.6.1.18 |
| TC | HRGMv2_0931_2 | HRGMv2_0931_2_83 | 97138 | 97602 | - | 4.A.6.1.18 |
| CAZyme | HRGMv2_0931_2 | HRGMv2_0931_2_84 | 97605 | 99401 | - | GH35 |
| pfam | HRGMv2_0931_2 | HRGMv2_0931_2_85 | 99887 | 100360 | - | DUF386 |
| CAZyme | HRGMv2_0931_2 | HRGMv2_0931_2_86 | 100393 | 101562 | - | CE9 |
| TF | HRGMv2_0931_2 | HRGMv2_0931_2_87 | 101706 | 102437 | - | GntR |
| TC | HRGMv2_0931_2 | HRGMv2_0931_2_88 | 102670 | 104157 | - | 4.A.1.1.7 |
Gene ID: HRGMv2_0931_2_76
Type: CAZyme
Location: 90624 - 91793 (-)
Type: CAZyme
Location: 90624 - 91793 (-)
Gene ID: HRGMv2_0931_2_77
Type: STP
Location: 91909 - 93075 (-)
Type: STP
Location: 91909 - 93075 (-)
Gene ID: HRGMv2_0931_2_78
Type: TF
Location: 93187 - 93921 (-)
Type: TF
Location: 93187 - 93921 (-)
Gene ID: HRGMv2_0931_2_79
Type: TC
Location: 94009 - 94437 (-)
Type: TC
Location: 94009 - 94437 (-)
Gene ID: HRGMv2_0931_2_80
Type:
Location: 94519 - 95142 (-)
Type:
Location: 94519 - 95142 (-)
Gene ID: HRGMv2_0931_2_81
Type: TC
Location: 95331 - 96170 (-)
Type: TC
Location: 95331 - 96170 (-)
Gene ID: HRGMv2_0931_2_82
Type: TC
Location: 96160 - 97044 (-)
Type: TC
Location: 96160 - 97044 (-)
Gene ID: HRGMv2_0931_2_83
Type: TC
Location: 97138 - 97602 (-)
Type: TC
Location: 97138 - 97602 (-)
Gene ID: HRGMv2_0931_2_84
Type: CAZyme
Location: 97605 - 99401 (-)
Type: CAZyme
Location: 97605 - 99401 (-)
Gene ID: HRGMv2_0931_2_85
Type: pfam
Location: 99887 - 100360 (-)
Type: pfam
Location: 99887 - 100360 (-)
Gene ID: HRGMv2_0931_2_86
Type: CAZyme
Location: 100393 - 101562 (-)
Type: CAZyme
Location: 100393 - 101562 (-)
Gene ID: HRGMv2_0931_2_87
Type: TF
Location: 101706 - 102437 (-)
Type: TF
Location: 101706 - 102437 (-)
Gene ID: HRGMv2_0931_2_88
Type: TC
Location: 102670 - 104157 (-)
Type: TC
Location: 102670 - 104157 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902467875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0931_2_81 | vegetarian > vegan | 2.72149 | 0.01037 |
| HRGMv2_0931_2_83 | vegetarian > vegan | 3.59745 | 0.01037 |
| HRGMv2_0931_2_84 | vegetarian > vegan | 2.95129 | 0.02155 |
| HRGMv2_0931_2_87 | vegetarian > vegan | 3.38059 | 0.01037 |