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Cluster: HRGMv2_0931_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0931_2 HRGMv2_0931_2_53 62565 62903 - 4.A.3.1.2
TF HRGMv2_0931_2 HRGMv2_0931_2_54 63118 64122 - LacI
TC HRGMv2_0931_2 HRGMv2_0931_2_55 64480 66246 + 4.A.3.1.1
CAZyme HRGMv2_0931_2 HRGMv2_0931_2_56 66313 67752 + GH1
TF HRGMv2_0931_2 HRGMv2_0931_2_57 68029 69066 - LacI
CAZyme HRGMv2_0931_2 HRGMv2_0931_2_58 69408 70850 + GH1
TC HRGMv2_0931_2 HRGMv2_0931_2_59 71027 72787 + 4.A.3.1.1
TF HRGMv2_0931_2 HRGMv2_0931_2_60 73125 74135 - LacI
TC HRGMv2_0931_2 HRGMv2_0931_2_61 74412 76190 + 4.A.3.1.1
CAZyme HRGMv2_0931_2 HRGMv2_0931_2_62 76267 77688 + GH1
pfam HRGMv2_0931_2 HRGMv2_0931_2_63 78054 79286 + Fic
STP HRGMv2_0931_2 HRGMv2_0931_2_64 79392 79787 - DeoRC
TC HRGMv2_0931_2 HRGMv2_0931_2_65 79950 81644 - 4.A.3.1.1
Gene ID: HRGMv2_0931_2_53
Type: TC
Location: 62565 - 62903 (-)
Gene ID: HRGMv2_0931_2_54
Type: TF
Location: 63118 - 64122 (-)
Gene ID: HRGMv2_0931_2_55
Type: TC
Location: 64480 - 66246 (+)
Gene ID: HRGMv2_0931_2_56
Type: CAZyme
Location: 66313 - 67752 (+)
Gene ID: HRGMv2_0931_2_57
Type: TF
Location: 68029 - 69066 (-)
Gene ID: HRGMv2_0931_2_58
Type: CAZyme
Location: 69408 - 70850 (+)
Gene ID: HRGMv2_0931_2_59
Type: TC
Location: 71027 - 72787 (+)
Gene ID: HRGMv2_0931_2_60
Type: TF
Location: 73125 - 74135 (-)
Gene ID: HRGMv2_0931_2_61
Type: TC
Location: 74412 - 76190 (+)
Gene ID: HRGMv2_0931_2_62
Type: CAZyme
Location: 76267 - 77688 (+)
Gene ID: HRGMv2_0931_2_63
Type: pfam
Location: 78054 - 79286 (+)
Gene ID: HRGMv2_0931_2_64
Type: STP
Location: 79392 - 79787 (-)
Gene ID: HRGMv2_0931_2_65
Type: TC
Location: 79950 - 81644 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0931_2_57 vegetarian > omnivore 1.09192 0.02242

🧭 Explore Read Mapping of CGC

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