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Cluster: HRGMv2_0931_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0931_2 HRGMv2_0931_2_22 27686 28705 - 2.A.10.1.4
sulfatase HRGMv2_0931_2 HRGMv2_0931_2_23 28814 29563 - S1_2
TF HRGMv2_0931_2 HRGMv2_0931_2_24 29854 30303 + MarR
TC HRGMv2_0931_2 HRGMv2_0931_2_25 30300 32666 + 3.A.1.135.6
TC HRGMv2_0931_2 HRGMv2_0931_2_26 32666 34522 + 3.A.1.135.6
NULL(UNKNOWN) HRGMv2_0931_2 HRGMv2_0931_2_27 34610 34999 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0931_2 HRGMv2_0931_2_28 35091 35363 - 8.A.8.1.6
CAZyme HRGMv2_0931_2 HRGMv2_0931_2_29 35442 36980 - GH1
TC HRGMv2_0931_2 HRGMv2_0931_2_30 37063 37392 - 4.A.3.2.8
TC HRGMv2_0931_2 HRGMv2_0931_2_31 37483 38796 - 4.A.3.2.8
Gene ID: HRGMv2_0931_2_22
Type: TC
Location: 27686 - 28705 (-)
Gene ID: HRGMv2_0931_2_23
Type: sulfatase
Location: 28814 - 29563 (-)
Gene ID: HRGMv2_0931_2_24
Type: TF
Location: 29854 - 30303 (+)
Gene ID: HRGMv2_0931_2_25
Type: TC
Location: 30300 - 32666 (+)
Gene ID: HRGMv2_0931_2_26
Type: TC
Location: 32666 - 34522 (+)
Gene ID: HRGMv2_0931_2_27
Type:
Location: 34610 - 34999 (-)
Gene ID: HRGMv2_0931_2_28
Type: TC
Location: 35091 - 35363 (-)
Gene ID: HRGMv2_0931_2_29
Type: CAZyme
Location: 35442 - 36980 (-)
Gene ID: HRGMv2_0931_2_30
Type: TC
Location: 37063 - 37392 (-)
Gene ID: HRGMv2_0931_2_31
Type: TC
Location: 37483 - 38796 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0931_2_22 vegan > omnivore 1.44470 0.02254
HRGMv2_0931_2_23 vegan > omnivore 1.24578 0.02254

🧭 Explore Read Mapping of CGC

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