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Cluster: HRGMv2_0931_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0931_12 HRGMv2_0931_12_16 20161 21543 - GH4
TC HRGMv2_0931_12 HRGMv2_0931_12_17 21547 23163 - 4.A.1.1.3
pfam HRGMv2_0931_12 HRGMv2_0931_12_18 23263 24129 - PRD | PRD | CAT_RBD
TC HRGMv2_0931_12 HRGMv2_0931_12_19 24136 24648 - 4.A.1.2.5
STP HRGMv2_0931_12 HRGMv2_0931_12_20 24992 25753 - Fer4
TC HRGMv2_0931_12 HRGMv2_0931_12_21 26371 28620 - 1.I.1.1.3
STP HRGMv2_0931_12 HRGMv2_0931_12_22 29208 30170 + FHA
STP HRGMv2_0931_12 HRGMv2_0931_12_23 30342 32426 + Pkinase
TC HRGMv2_0931_12 HRGMv2_0931_12_24 33079 35418 + 3.A.3.5.15
Gene ID: HRGMv2_0931_12_16
Type: CAZyme
Location: 20161 - 21543 (-)
Gene ID: HRGMv2_0931_12_17
Type: TC
Location: 21547 - 23163 (-)
Gene ID: HRGMv2_0931_12_18
Type: pfam
Location: 23263 - 24129 (-)
Gene ID: HRGMv2_0931_12_19
Type: TC
Location: 24136 - 24648 (-)
Gene ID: HRGMv2_0931_12_20
Type: STP
Location: 24992 - 25753 (-)
Gene ID: HRGMv2_0931_12_21
Type: TC
Location: 26371 - 28620 (-)
Gene ID: HRGMv2_0931_12_22
Type: STP
Location: 29208 - 30170 (+)
Gene ID: HRGMv2_0931_12_23
Type: STP
Location: 30342 - 32426 (+)
Gene ID: HRGMv2_0931_12_24
Type: TC
Location: 33079 - 35418 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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