Cluster: HRGMv2_0931_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0931
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0931_10 | HRGMv2_0931_10_11 | 11290 | 12516 | - | 2.A.66.2.10 |
| NULL(UNKNOWN) | HRGMv2_0931_10 | HRGMv2_0931_10_12 | 12509 | 13765 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0931_10 | HRGMv2_0931_10_13 | 13762 | 14808 | - | GT2 |
| pfam | HRGMv2_0931_10 | HRGMv2_0931_10_14 | 14829 | 15278 | - | Hexapep |
| pfam | HRGMv2_0931_10 | HRGMv2_0931_10_15 | 15262 | 16362 | - | Epimerase_2 |
| CAZyme | HRGMv2_0931_10 | HRGMv2_0931_10_16 | 16355 | 17161 | - | GT26 |
| TC | HRGMv2_0931_10 | HRGMv2_0931_10_17 | 17148 | 17897 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_0931_10_11
Type: TC
Location: 11290 - 12516 (-)
Type: TC
Location: 11290 - 12516 (-)
Gene ID: HRGMv2_0931_10_12
Type:
Location: 12509 - 13765 (-)
Type:
Location: 12509 - 13765 (-)
Gene ID: HRGMv2_0931_10_13
Type: CAZyme
Location: 13762 - 14808 (-)
Type: CAZyme
Location: 13762 - 14808 (-)
Gene ID: HRGMv2_0931_10_14
Type: pfam
Location: 14829 - 15278 (-)
Type: pfam
Location: 14829 - 15278 (-)
Gene ID: HRGMv2_0931_10_15
Type: pfam
Location: 15262 - 16362 (-)
Type: pfam
Location: 15262 - 16362 (-)
Gene ID: HRGMv2_0931_10_16
Type: CAZyme
Location: 16355 - 17161 (-)
Type: CAZyme
Location: 16355 - 17161 (-)
Gene ID: HRGMv2_0931_10_17
Type: TC
Location: 17148 - 17897 (-)
Type: TC
Location: 17148 - 17897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902467875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.