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Cluster: HRGMv2_0928_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0928_24 HRGMv2_0928_24_15 19334 20710 - GH13_20
TC HRGMv2_0928_24 HRGMv2_0928_24_16 20864 22060 - 2.A.1.2.18
TC HRGMv2_0928_24 HRGMv2_0928_24_17 22182 24542 - 9.A.8.1.6
peptidase HRGMv2_0928_24 HRGMv2_0928_24_18 25016 25915 - S09.UPW
TC HRGMv2_0928_24 HRGMv2_0928_24_19 26159 26722 + 4.A.1.2.6
pfam HRGMv2_0928_24 HRGMv2_0928_24_20 26904 28307 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0928_24 HRGMv2_0928_24_21 28566 29351 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0928_24 HRGMv2_0928_24_22 29512 30492 + 3.A.1.34.1
TC HRGMv2_0928_24 HRGMv2_0928_24_23 30696 31619 + 3.A.1.34.1
TC HRGMv2_0928_24 HRGMv2_0928_24_24 31612 32406 + 3.A.1.34.1
Gene ID: HRGMv2_0928_24_15
Type: CAZyme
Location: 19334 - 20710 (-)
Gene ID: HRGMv2_0928_24_16
Type: TC
Location: 20864 - 22060 (-)
Gene ID: HRGMv2_0928_24_17
Type: TC
Location: 22182 - 24542 (-)
Gene ID: HRGMv2_0928_24_18
Type: peptidase
Location: 25016 - 25915 (-)
Gene ID: HRGMv2_0928_24_19
Type: TC
Location: 26159 - 26722 (+)
Gene ID: HRGMv2_0928_24_20
Type: pfam
Location: 26904 - 28307 (+)
Gene ID: HRGMv2_0928_24_21
Type:
Location: 28566 - 29351 (+)
Gene ID: HRGMv2_0928_24_22
Type: TC
Location: 29512 - 30492 (+)
Gene ID: HRGMv2_0928_24_23
Type: TC
Location: 30696 - 31619 (+)
Gene ID: HRGMv2_0928_24_24
Type: TC
Location: 31612 - 32406 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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