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Cluster: HRGMv2_0928_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0928_19 HRGMv2_0928_19_13 15918 17300 - GH4
TC HRGMv2_0928_19 HRGMv2_0928_19_14 17304 18920 - 4.A.1.1.3
pfam HRGMv2_0928_19 HRGMv2_0928_19_15 19020 19886 - PRD | PRD | CAT_RBD
TC HRGMv2_0928_19 HRGMv2_0928_19_16 19893 20405 - 4.A.1.2.5
STP HRGMv2_0928_19 HRGMv2_0928_19_17 20749 21510 - Fer4
TC HRGMv2_0928_19 HRGMv2_0928_19_18 22128 24377 - 1.I.1.1.3
STP HRGMv2_0928_19 HRGMv2_0928_19_19 24966 25928 + FHA
STP HRGMv2_0928_19 HRGMv2_0928_19_20 26100 28184 + Pkinase
TC HRGMv2_0928_19 HRGMv2_0928_19_21 28516 30855 + 3.A.3.5.15
Gene ID: HRGMv2_0928_19_13
Type: CAZyme
Location: 15918 - 17300 (-)
Gene ID: HRGMv2_0928_19_14
Type: TC
Location: 17304 - 18920 (-)
Gene ID: HRGMv2_0928_19_15
Type: pfam
Location: 19020 - 19886 (-)
Gene ID: HRGMv2_0928_19_16
Type: TC
Location: 19893 - 20405 (-)
Gene ID: HRGMv2_0928_19_17
Type: STP
Location: 20749 - 21510 (-)
Gene ID: HRGMv2_0928_19_18
Type: TC
Location: 22128 - 24377 (-)
Gene ID: HRGMv2_0928_19_19
Type: STP
Location: 24966 - 25928 (+)
Gene ID: HRGMv2_0928_19_20
Type: STP
Location: 26100 - 28184 (+)
Gene ID: HRGMv2_0928_19_21
Type: TC
Location: 28516 - 30855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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