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Cluster: HRGMv2_0928_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0928_15 HRGMv2_0928_15_15 12195 12677 + 4.A.6.1.3
sulfatase HRGMv2_0928_15 HRGMv2_0928_15_16 13003 14055 - S1_4
TF HRGMv2_0928_15 HRGMv2_0928_15_17 14261 15025 + HTH_DeoR
CAZyme HRGMv2_0928_15 HRGMv2_0928_15_18 15599 17020 - GH1
TC HRGMv2_0928_15 HRGMv2_0928_15_19 17096 18874 - 4.A.3.1.1
TF HRGMv2_0928_15 HRGMv2_0928_15_20 19150 20160 + LacI
TC HRGMv2_0928_15 HRGMv2_0928_15_21 20494 22254 - 4.A.3.1.1
CAZyme HRGMv2_0928_15 HRGMv2_0928_15_22 22431 23873 - GH1
TF HRGMv2_0928_15 HRGMv2_0928_15_23 24215 25252 + LacI
CAZyme HRGMv2_0928_15 HRGMv2_0928_15_24 25515 26954 - GH1
TC HRGMv2_0928_15 HRGMv2_0928_15_25 27021 28787 - 4.A.3.1.1
TF HRGMv2_0928_15 HRGMv2_0928_15_26 29145 30149 + LacI
TC HRGMv2_0928_15 HRGMv2_0928_15_27 30364 30702 + 4.A.3.1.2
Gene ID: HRGMv2_0928_15_15
Type: TC
Location: 12195 - 12677 (+)
Gene ID: HRGMv2_0928_15_16
Type: sulfatase
Location: 13003 - 14055 (-)
Gene ID: HRGMv2_0928_15_17
Type: TF
Location: 14261 - 15025 (+)
Gene ID: HRGMv2_0928_15_18
Type: CAZyme
Location: 15599 - 17020 (-)
Gene ID: HRGMv2_0928_15_19
Type: TC
Location: 17096 - 18874 (-)
Gene ID: HRGMv2_0928_15_20
Type: TF
Location: 19150 - 20160 (+)
Gene ID: HRGMv2_0928_15_21
Type: TC
Location: 20494 - 22254 (-)
Gene ID: HRGMv2_0928_15_22
Type: CAZyme
Location: 22431 - 23873 (-)
Gene ID: HRGMv2_0928_15_23
Type: TF
Location: 24215 - 25252 (+)
Gene ID: HRGMv2_0928_15_24
Type: CAZyme
Location: 25515 - 26954 (-)
Gene ID: HRGMv2_0928_15_25
Type: TC
Location: 27021 - 28787 (-)
Gene ID: HRGMv2_0928_15_26
Type: TF
Location: 29145 - 30149 (+)
Gene ID: HRGMv2_0928_15_27
Type: TC
Location: 30364 - 30702 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0928_15_23 vegetarian > omnivore 1.03705 0.02677

🧭 Explore Read Mapping of CGC

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