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Cluster: HRGMv2_0928_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0928_15 HRGMv2_0928_15_3 1698 2141 + 4.A.6.1.16
pfam HRGMv2_0928_15 HRGMv2_0928_15_4 2141 2422 + YajC
TC HRGMv2_0928_15 HRGMv2_0928_15_5 2459 2941 + 4.A.6.1.4
TC HRGMv2_0928_15 HRGMv2_0928_15_6 3032 3832 + 4.A.6.1.4
TC HRGMv2_0928_15 HRGMv2_0928_15_7 3822 4904 + 4.A.6.1.4
TF HRGMv2_0928_15 HRGMv2_0928_15_8 5090 5821 + GntR
STP HRGMv2_0928_15 HRGMv2_0928_15_9 5936 7102 + SIS | SIS
CAZyme HRGMv2_0928_15 HRGMv2_0928_15_10 7220 8389 + CE9
Gene ID: HRGMv2_0928_15_3
Type: TC
Location: 1698 - 2141 (+)
Gene ID: HRGMv2_0928_15_4
Type: pfam
Location: 2141 - 2422 (+)
Gene ID: HRGMv2_0928_15_5
Type: TC
Location: 2459 - 2941 (+)
Gene ID: HRGMv2_0928_15_6
Type: TC
Location: 3032 - 3832 (+)
Gene ID: HRGMv2_0928_15_7
Type: TC
Location: 3822 - 4904 (+)
Gene ID: HRGMv2_0928_15_8
Type: TF
Location: 5090 - 5821 (+)
Gene ID: HRGMv2_0928_15_9
Type: STP
Location: 5936 - 7102 (+)
Gene ID: HRGMv2_0928_15_10
Type: CAZyme
Location: 7220 - 8389 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0928_15_4 vegan > omnivore 1.07243 0.00701

🧭 Explore Read Mapping of CGC

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