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Cluster: HRGMv2_0928_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0928_25 HRGMv2_0928_25_11 14662 17112 - 4.A.1.1.8
TF HRGMv2_0928_25 HRGMv2_0928_25_12 17342 18061 + GntR
TC HRGMv2_0928_25 HRGMv2_0928_25_13 18640 19686 + 3.A.1.1.45
TC HRGMv2_0928_25 HRGMv2_0928_25_14 19774 20628 + 3.A.1.1.45
TC HRGMv2_0928_25 HRGMv2_0928_25_15 20628 21467 + 3.A.1.1.45
TC HRGMv2_0928_25 HRGMv2_0928_25_16 21536 22735 + 3.A.1.1.22
CAZyme HRGMv2_0928_25 HRGMv2_0928_25_17 23193 25460 - GT35
CAZyme HRGMv2_0928_25 HRGMv2_0928_25_18 25589 27094 - GH77
Gene ID: HRGMv2_0928_25_11
Type: TC
Location: 14662 - 17112 (-)
Gene ID: HRGMv2_0928_25_12
Type: TF
Location: 17342 - 18061 (+)
Gene ID: HRGMv2_0928_25_13
Type: TC
Location: 18640 - 19686 (+)
Gene ID: HRGMv2_0928_25_14
Type: TC
Location: 19774 - 20628 (+)
Gene ID: HRGMv2_0928_25_15
Type: TC
Location: 20628 - 21467 (+)
Gene ID: HRGMv2_0928_25_16
Type: TC
Location: 21536 - 22735 (+)
Gene ID: HRGMv2_0928_25_17
Type: CAZyme
Location: 23193 - 25460 (-)
Gene ID: HRGMv2_0928_25_18
Type: CAZyme
Location: 25589 - 27094 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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