Cluster: HRGMv2_0927_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0927
- CGC Family ID: CGCFAM_00024
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0927_12 | HRGMv2_0927_12_7 | 3836 | 5212 | - | GH13_20 |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_8 | 5367 | 6563 | - | 2.A.1.2.18 |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_9 | 6688 | 9048 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | HRGMv2_0927_12 | HRGMv2_0927_12_10 | 9170 | 9490 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_0927_12 | HRGMv2_0927_12_11 | 9532 | 10437 | - | S09.UPW |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_12 | 10684 | 11247 | + | 4.A.1.2.6 |
| pfam | HRGMv2_0927_12 | HRGMv2_0927_12_13 | 11429 | 12832 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | HRGMv2_0927_12 | HRGMv2_0927_12_14 | 13082 | 13867 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_15 | 14027 | 15007 | + | 3.A.1.34.1 |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_16 | 15212 | 16135 | + | 3.A.1.34.1 |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_17 | 16128 | 16922 | + | 3.A.1.34.1 |
| TC | HRGMv2_0927_12 | HRGMv2_0927_12_18 | 17070 | 17837 | + | 1.A.23.4.10 |
Gene ID: HRGMv2_0927_12_7
Type: CAZyme
Location: 3836 - 5212 (-)
Type: CAZyme
Location: 3836 - 5212 (-)
Gene ID: HRGMv2_0927_12_8
Type: TC
Location: 5367 - 6563 (-)
Type: TC
Location: 5367 - 6563 (-)
Gene ID: HRGMv2_0927_12_9
Type: TC
Location: 6688 - 9048 (-)
Type: TC
Location: 6688 - 9048 (-)
Gene ID: HRGMv2_0927_12_10
Type:
Location: 9170 - 9490 (-)
Type:
Location: 9170 - 9490 (-)
Gene ID: HRGMv2_0927_12_11
Type: peptidase
Location: 9532 - 10437 (-)
Type: peptidase
Location: 9532 - 10437 (-)
Gene ID: HRGMv2_0927_12_12
Type: TC
Location: 10684 - 11247 (+)
Type: TC
Location: 10684 - 11247 (+)
Gene ID: HRGMv2_0927_12_13
Type: pfam
Location: 11429 - 12832 (+)
Type: pfam
Location: 11429 - 12832 (+)
Gene ID: HRGMv2_0927_12_14
Type:
Location: 13082 - 13867 (+)
Type:
Location: 13082 - 13867 (+)
Gene ID: HRGMv2_0927_12_15
Type: TC
Location: 14027 - 15007 (+)
Type: TC
Location: 14027 - 15007 (+)
Gene ID: HRGMv2_0927_12_16
Type: TC
Location: 15212 - 16135 (+)
Type: TC
Location: 15212 - 16135 (+)
Gene ID: HRGMv2_0927_12_17
Type: TC
Location: 16128 - 16922 (+)
Type: TC
Location: 16128 - 16922 (+)
Gene ID: HRGMv2_0927_12_18
Type: TC
Location: 17070 - 17837 (+)
Type: TC
Location: 17070 - 17837 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.