Cluster: HRGMv2_0927_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0927
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0927_2 | HRGMv2_0927_2_45 | 44749 | 46443 | + | 4.A.3.1.1 |
| STP | HRGMv2_0927_2 | HRGMv2_0927_2_46 | 46606 | 46944 | + | DeoRC |
| pfam | HRGMv2_0927_2 | HRGMv2_0927_2_47 | 46982 | 48214 | - | Fic |
| CAZyme | HRGMv2_0927_2 | HRGMv2_0927_2_48 | 48581 | 50002 | - | GH1 |
| TC | HRGMv2_0927_2 | HRGMv2_0927_2_49 | 50078 | 51856 | - | 4.A.3.1.1 |
| TF | HRGMv2_0927_2 | HRGMv2_0927_2_50 | 52132 | 53142 | + | LacI |
| TC | HRGMv2_0927_2 | HRGMv2_0927_2_51 | 53480 | 55240 | - | 4.A.3.1.1 |
| CAZyme | HRGMv2_0927_2 | HRGMv2_0927_2_52 | 55417 | 56859 | - | GH1 |
Gene ID: HRGMv2_0927_2_45
Type: TC
Location: 44749 - 46443 (+)
Type: TC
Location: 44749 - 46443 (+)
Gene ID: HRGMv2_0927_2_46
Type: STP
Location: 46606 - 46944 (+)
Type: STP
Location: 46606 - 46944 (+)
Gene ID: HRGMv2_0927_2_47
Type: pfam
Location: 46982 - 48214 (-)
Type: pfam
Location: 46982 - 48214 (-)
Gene ID: HRGMv2_0927_2_48
Type: CAZyme
Location: 48581 - 50002 (-)
Type: CAZyme
Location: 48581 - 50002 (-)
Gene ID: HRGMv2_0927_2_49
Type: TC
Location: 50078 - 51856 (-)
Type: TC
Location: 50078 - 51856 (-)
Gene ID: HRGMv2_0927_2_50
Type: TF
Location: 52132 - 53142 (+)
Type: TF
Location: 52132 - 53142 (+)
Gene ID: HRGMv2_0927_2_51
Type: TC
Location: 53480 - 55240 (-)
Type: TC
Location: 53480 - 55240 (-)
Gene ID: HRGMv2_0927_2_52
Type: CAZyme
Location: 55417 - 56859 (-)
Type: CAZyme
Location: 55417 - 56859 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.