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Cluster: HRGMv2_0927_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0927_2 HRGMv2_0927_2_26 27326 27769 + 4.A.6.1.16
pfam HRGMv2_0927_2 HRGMv2_0927_2_27 27769 28050 + YajC
TC HRGMv2_0927_2 HRGMv2_0927_2_28 28087 28569 + 4.A.6.1.4
TC HRGMv2_0927_2 HRGMv2_0927_2_29 28659 29459 + 4.A.6.1.4
TC HRGMv2_0927_2 HRGMv2_0927_2_30 29449 30531 + 4.A.6.1.4
TF HRGMv2_0927_2 HRGMv2_0927_2_31 30717 31448 + GntR
STP HRGMv2_0927_2 HRGMv2_0927_2_32 31563 32729 + SIS | SIS
CAZyme HRGMv2_0927_2 HRGMv2_0927_2_33 32848 34017 + CE9
Gene ID: HRGMv2_0927_2_26
Type: TC
Location: 27326 - 27769 (+)
Gene ID: HRGMv2_0927_2_27
Type: pfam
Location: 27769 - 28050 (+)
Gene ID: HRGMv2_0927_2_28
Type: TC
Location: 28087 - 28569 (+)
Gene ID: HRGMv2_0927_2_29
Type: TC
Location: 28659 - 29459 (+)
Gene ID: HRGMv2_0927_2_30
Type: TC
Location: 29449 - 30531 (+)
Gene ID: HRGMv2_0927_2_31
Type: TF
Location: 30717 - 31448 (+)
Gene ID: HRGMv2_0927_2_32
Type: STP
Location: 31563 - 32729 (+)
Gene ID: HRGMv2_0927_2_33
Type: CAZyme
Location: 32848 - 34017 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0927_2_27 vegan > omnivore 1.06273 0.00566

🧭 Explore Read Mapping of CGC

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