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Cluster: HRGMv2_0926_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0926_16 HRGMv2_0926_16_19 15148 16530 - GH4
TC HRGMv2_0926_16 HRGMv2_0926_16_20 16534 18150 - 4.A.1.1.3
pfam HRGMv2_0926_16 HRGMv2_0926_16_21 18250 19116 - PRD | PRD | CAT_RBD
TC HRGMv2_0926_16 HRGMv2_0926_16_22 19123 19635 - 4.A.1.2.5
TC HRGMv2_0926_16 HRGMv2_0926_16_23 20085 22241 - 1.I.1.1.3
STP HRGMv2_0926_16 HRGMv2_0926_16_24 22761 23723 + FHA
STP HRGMv2_0926_16 HRGMv2_0926_16_25 23895 25979 + Pkinase
TC HRGMv2_0926_16 HRGMv2_0926_16_26 26231 28570 + 3.A.3.5.15
Gene ID: HRGMv2_0926_16_19
Type: CAZyme
Location: 15148 - 16530 (-)
Gene ID: HRGMv2_0926_16_20
Type: TC
Location: 16534 - 18150 (-)
Gene ID: HRGMv2_0926_16_21
Type: pfam
Location: 18250 - 19116 (-)
Gene ID: HRGMv2_0926_16_22
Type: TC
Location: 19123 - 19635 (-)
Gene ID: HRGMv2_0926_16_23
Type: TC
Location: 20085 - 22241 (-)
Gene ID: HRGMv2_0926_16_24
Type: STP
Location: 22761 - 23723 (+)
Gene ID: HRGMv2_0926_16_25
Type: STP
Location: 23895 - 25979 (+)
Gene ID: HRGMv2_0926_16_26
Type: TC
Location: 26231 - 28570 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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