Cluster: HRGMv2_0924_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_0924
- CGC Family ID: CGCFAM_00243
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0924_3 | HRGMv2_0924_3_34 | 39984 | 41153 | - | CE9 |
| STP | HRGMv2_0924_3 | HRGMv2_0924_3_35 | 41271 | 42437 | - | SIS | SIS |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_36 | 42549 | 43283 | - | GntR |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_37 | 43371 | 43799 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | HRGMv2_0924_3 | HRGMv2_0924_3_38 | 43881 | 44504 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_39 | 44695 | 45534 | - | 4.A.6.1.18 |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_40 | 45524 | 46411 | - | 4.A.6.1.18 |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_41 | 46505 | 46969 | - | 4.A.6.1.18 |
| CAZyme | HRGMv2_0924_3 | HRGMv2_0924_3_42 | 46972 | 48768 | - | GH35 |
| peptidase | HRGMv2_0924_3 | HRGMv2_0924_3_43 | 49243 | 49851 | - | M38.UNW |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_44 | 49995 | 50726 | - | GntR |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_45 | 50882 | 51295 | - | 4.A.1.1.7 |
Gene ID: HRGMv2_0924_3_34
Type: CAZyme
Location: 39984 - 41153 (-)
Type: CAZyme
Location: 39984 - 41153 (-)
Gene ID: HRGMv2_0924_3_35
Type: STP
Location: 41271 - 42437 (-)
Type: STP
Location: 41271 - 42437 (-)
Gene ID: HRGMv2_0924_3_36
Type: TF
Location: 42549 - 43283 (-)
Type: TF
Location: 42549 - 43283 (-)
Gene ID: HRGMv2_0924_3_37
Type: TC
Location: 43371 - 43799 (-)
Type: TC
Location: 43371 - 43799 (-)
Gene ID: HRGMv2_0924_3_38
Type:
Location: 43881 - 44504 (-)
Type:
Location: 43881 - 44504 (-)
Gene ID: HRGMv2_0924_3_39
Type: TC
Location: 44695 - 45534 (-)
Type: TC
Location: 44695 - 45534 (-)
Gene ID: HRGMv2_0924_3_40
Type: TC
Location: 45524 - 46411 (-)
Type: TC
Location: 45524 - 46411 (-)
Gene ID: HRGMv2_0924_3_41
Type: TC
Location: 46505 - 46969 (-)
Type: TC
Location: 46505 - 46969 (-)
Gene ID: HRGMv2_0924_3_42
Type: CAZyme
Location: 46972 - 48768 (-)
Type: CAZyme
Location: 46972 - 48768 (-)
Gene ID: HRGMv2_0924_3_43
Type: peptidase
Location: 49243 - 49851 (-)
Type: peptidase
Location: 49243 - 49851 (-)
Gene ID: HRGMv2_0924_3_44
Type: TF
Location: 49995 - 50726 (-)
Type: TF
Location: 49995 - 50726 (-)
Gene ID: HRGMv2_0924_3_45
Type: TC
Location: 50882 - 51295 (-)
Type: TC
Location: 50882 - 51295 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937989795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0924_3_39 | vegetarian > vegan | 2.40298 | 0.02517 |
| HRGMv2_0924_3_41 | vegetarian > vegan | 3.24871 | 0.02517 |
| HRGMv2_0924_3_42 | vegetarian > vegan | 2.65599 | 0.02517 |
| HRGMv2_0924_3_44 | vegetarian > vegan | 3.30377 | 0.02517 |