Cluster: HRGMv2_0924_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0924
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_17 | 17740 | 18078 | - | 4.A.3.1.2 |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_18 | 18293 | 19297 | - | LacI |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_19 | 19655 | 21430 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0924_3 | HRGMv2_0924_3_20 | 21497 | 22936 | + | GH1 |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_21 | 23199 | 24236 | - | LacI |
| CAZyme | HRGMv2_0924_3 | HRGMv2_0924_3_22 | 24578 | 26020 | + | GH1 |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_23 | 26197 | 27957 | + | 4.A.3.1.1 |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_24 | 28295 | 29305 | - | LacI |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_25 | 29581 | 31341 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_0924_3 | HRGMv2_0924_3_26 | 31418 | 32839 | + | GH1 |
| TF | HRGMv2_0924_3 | HRGMv2_0924_3_27 | 33345 | 34109 | - | HTH_DeoR |
| sulfatase | HRGMv2_0924_3 | HRGMv2_0924_3_28 | 34316 | 35368 | + | S1_4 |
| TC | HRGMv2_0924_3 | HRGMv2_0924_3_29 | 35695 | 36177 | - | 4.A.6.1.5 |
Gene ID: HRGMv2_0924_3_17
Type: TC
Location: 17740 - 18078 (-)
Type: TC
Location: 17740 - 18078 (-)
Gene ID: HRGMv2_0924_3_18
Type: TF
Location: 18293 - 19297 (-)
Type: TF
Location: 18293 - 19297 (-)
Gene ID: HRGMv2_0924_3_19
Type: TC
Location: 19655 - 21430 (+)
Type: TC
Location: 19655 - 21430 (+)
Gene ID: HRGMv2_0924_3_20
Type: CAZyme
Location: 21497 - 22936 (+)
Type: CAZyme
Location: 21497 - 22936 (+)
Gene ID: HRGMv2_0924_3_21
Type: TF
Location: 23199 - 24236 (-)
Type: TF
Location: 23199 - 24236 (-)
Gene ID: HRGMv2_0924_3_22
Type: CAZyme
Location: 24578 - 26020 (+)
Type: CAZyme
Location: 24578 - 26020 (+)
Gene ID: HRGMv2_0924_3_23
Type: TC
Location: 26197 - 27957 (+)
Type: TC
Location: 26197 - 27957 (+)
Gene ID: HRGMv2_0924_3_24
Type: TF
Location: 28295 - 29305 (-)
Type: TF
Location: 28295 - 29305 (-)
Gene ID: HRGMv2_0924_3_25
Type: TC
Location: 29581 - 31341 (+)
Type: TC
Location: 29581 - 31341 (+)
Gene ID: HRGMv2_0924_3_26
Type: CAZyme
Location: 31418 - 32839 (+)
Type: CAZyme
Location: 31418 - 32839 (+)
Gene ID: HRGMv2_0924_3_27
Type: TF
Location: 33345 - 34109 (-)
Type: TF
Location: 33345 - 34109 (-)
Gene ID: HRGMv2_0924_3_28
Type: sulfatase
Location: 34316 - 35368 (+)
Type: sulfatase
Location: 34316 - 35368 (+)
Gene ID: HRGMv2_0924_3_29
Type: TC
Location: 35695 - 36177 (-)
Type: TC
Location: 35695 - 36177 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937989795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.