Cluster: HRGMv2_0923_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0923
- CGC Family ID: CGCFAM_00008
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0923_6 | HRGMv2_0923_6_60 | 67704 | 68471 | - | 3.A.1.103.1 |
| TC | HRGMv2_0923_6 | HRGMv2_0923_6_61 | 68484 | 69329 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_0923_6 | HRGMv2_0923_6_62 | 69491 | 70426 | + | GT81 |
| NULL(UNKNOWN) | HRGMv2_0923_6 | HRGMv2_0923_6_63 | 70600 | 70920 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0923_6 | HRGMv2_0923_6_64 | 71059 | 71676 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0923_6 | HRGMv2_0923_6_65 | 71834 | 73726 | - | GT111 |
Gene ID: HRGMv2_0923_6_60
Type: TC
Location: 67704 - 68471 (-)
Type: TC
Location: 67704 - 68471 (-)
Gene ID: HRGMv2_0923_6_61
Type: TC
Location: 68484 - 69329 (-)
Type: TC
Location: 68484 - 69329 (-)
Gene ID: HRGMv2_0923_6_62
Type: CAZyme
Location: 69491 - 70426 (+)
Type: CAZyme
Location: 69491 - 70426 (+)
Gene ID: HRGMv2_0923_6_63
Type:
Location: 70600 - 70920 (+)
Type:
Location: 70600 - 70920 (+)
Gene ID: HRGMv2_0923_6_64
Type:
Location: 71059 - 71676 (+)
Type:
Location: 71059 - 71676 (+)
Gene ID: HRGMv2_0923_6_65
Type: CAZyme
Location: 71834 - 73726 (-)
Type: CAZyme
Location: 71834 - 73726 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.