Cluster: HRGMv2_0923_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0923
- CGC Family ID: CGCFAM_00019
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0923_2 | HRGMv2_0923_2_57 | 79828 | 81210 | - | GH4 |
| TC | HRGMv2_0923_2 | HRGMv2_0923_2_58 | 81214 | 82830 | - | 4.A.1.1.3 |
| pfam | HRGMv2_0923_2 | HRGMv2_0923_2_59 | 82930 | 83784 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_0923_2 | HRGMv2_0923_2_60 | 83803 | 84315 | - | 4.A.1.2.11 |
| NULL(UNKNOWN) | HRGMv2_0923_2 | HRGMv2_0923_2_61 | 84782 | 85357 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0923_2 | HRGMv2_0923_2_62 | 85986 | 88256 | - | 1.I.1.1.3 |
| TC | HRGMv2_0923_2 | HRGMv2_0923_2_63 | 88817 | 91156 | + | 3.A.3.5.15 |
Gene ID: HRGMv2_0923_2_57
Type: CAZyme
Location: 79828 - 81210 (-)
Type: CAZyme
Location: 79828 - 81210 (-)
Gene ID: HRGMv2_0923_2_58
Type: TC
Location: 81214 - 82830 (-)
Type: TC
Location: 81214 - 82830 (-)
Gene ID: HRGMv2_0923_2_59
Type: pfam
Location: 82930 - 83784 (-)
Type: pfam
Location: 82930 - 83784 (-)
Gene ID: HRGMv2_0923_2_60
Type: TC
Location: 83803 - 84315 (-)
Type: TC
Location: 83803 - 84315 (-)
Gene ID: HRGMv2_0923_2_61
Type:
Location: 84782 - 85357 (-)
Type:
Location: 84782 - 85357 (-)
Gene ID: HRGMv2_0923_2_62
Type: TC
Location: 85986 - 88256 (-)
Type: TC
Location: 85986 - 88256 (-)
Gene ID: HRGMv2_0923_2_63
Type: TC
Location: 88817 - 91156 (+)
Type: TC
Location: 88817 - 91156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.