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Cluster: HRGMv2_0923_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0923_38 HRGMv2_0923_38_6 4074 5243 - CE9
STP HRGMv2_0923_38 HRGMv2_0923_38_7 5361 6527 - SIS | SIS
TF HRGMv2_0923_38 HRGMv2_0923_38_8 6642 7373 - GntR
TC HRGMv2_0923_38 HRGMv2_0923_38_9 7558 8640 - 4.A.6.1.4
TC HRGMv2_0923_38 HRGMv2_0923_38_10 8630 9430 - 4.A.6.1.4
TC HRGMv2_0923_38 HRGMv2_0923_38_11 9521 10003 - 4.A.6.1.4
pfam HRGMv2_0923_38 HRGMv2_0923_38_12 10040 10321 - YajC
TC HRGMv2_0923_38 HRGMv2_0923_38_13 10321 10764 - 4.A.6.1.16
Gene ID: HRGMv2_0923_38_6
Type: CAZyme
Location: 4074 - 5243 (-)
Gene ID: HRGMv2_0923_38_7
Type: STP
Location: 5361 - 6527 (-)
Gene ID: HRGMv2_0923_38_8
Type: TF
Location: 6642 - 7373 (-)
Gene ID: HRGMv2_0923_38_9
Type: TC
Location: 7558 - 8640 (-)
Gene ID: HRGMv2_0923_38_10
Type: TC
Location: 8630 - 9430 (-)
Gene ID: HRGMv2_0923_38_11
Type: TC
Location: 9521 - 10003 (-)
Gene ID: HRGMv2_0923_38_12
Type: pfam
Location: 10040 - 10321 (-)
Gene ID: HRGMv2_0923_38_13
Type: TC
Location: 10321 - 10764 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0923_38_12 vegan > omnivore 1.05674 0.00566

🧭 Explore Read Mapping of CGC

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