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Cluster: HRGMv2_0923_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0923_28 HRGMv2_0923_28_4 5524 7974 - 4.A.1.1.8
TF HRGMv2_0923_28 HRGMv2_0923_28_5 8199 8918 + GntR
TC HRGMv2_0923_28 HRGMv2_0923_28_6 9225 10541 + 3.A.1.1.45
TC HRGMv2_0923_28 HRGMv2_0923_28_7 10629 11483 + 3.A.1.1.45
TC HRGMv2_0923_28 HRGMv2_0923_28_8 11483 12322 + 3.A.1.1.45
TC HRGMv2_0923_28 HRGMv2_0923_28_9 12391 13590 + 3.A.1.1.22
CAZyme HRGMv2_0923_28 HRGMv2_0923_28_10 14046 16313 - GT35
CAZyme HRGMv2_0923_28 HRGMv2_0923_28_11 16442 17947 - GH77
Gene ID: HRGMv2_0923_28_4
Type: TC
Location: 5524 - 7974 (-)
Gene ID: HRGMv2_0923_28_5
Type: TF
Location: 8199 - 8918 (+)
Gene ID: HRGMv2_0923_28_6
Type: TC
Location: 9225 - 10541 (+)
Gene ID: HRGMv2_0923_28_7
Type: TC
Location: 10629 - 11483 (+)
Gene ID: HRGMv2_0923_28_8
Type: TC
Location: 11483 - 12322 (+)
Gene ID: HRGMv2_0923_28_9
Type: TC
Location: 12391 - 13590 (+)
Gene ID: HRGMv2_0923_28_10
Type: CAZyme
Location: 14046 - 16313 (-)
Gene ID: HRGMv2_0923_28_11
Type: CAZyme
Location: 16442 - 17947 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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