Cluster: HRGMv2_0923_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0923
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0923_19 | HRGMv2_0923_19_18 | 20577 | 21065 | + | 4.A.6.1.9 |
| TC | HRGMv2_0923_19 | HRGMv2_0923_19_19 | 21138 | 21995 | + | 4.A.6.1.1 |
| TC | HRGMv2_0923_19 | HRGMv2_0923_19_20 | 21995 | 22822 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_0923_19 | HRGMv2_0923_19_21 | 23018 | 23344 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0923_19 | HRGMv2_0923_19_22 | 23449 | 23889 | + | MarR |
| CAZyme | HRGMv2_0923_19 | HRGMv2_0923_19_23 | 24402 | 30815 | + | GH31_18 |
Gene ID: HRGMv2_0923_19_18
Type: TC
Location: 20577 - 21065 (+)
Type: TC
Location: 20577 - 21065 (+)
Gene ID: HRGMv2_0923_19_19
Type: TC
Location: 21138 - 21995 (+)
Type: TC
Location: 21138 - 21995 (+)
Gene ID: HRGMv2_0923_19_20
Type: TC
Location: 21995 - 22822 (+)
Type: TC
Location: 21995 - 22822 (+)
Gene ID: HRGMv2_0923_19_21
Type:
Location: 23018 - 23344 (+)
Type:
Location: 23018 - 23344 (+)
Gene ID: HRGMv2_0923_19_22
Type: TF
Location: 23449 - 23889 (+)
Type: TF
Location: 23449 - 23889 (+)
Gene ID: HRGMv2_0923_19_23
Type: CAZyme
Location: 24402 - 30815 (+)
Type: CAZyme
Location: 24402 - 30815 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0923_19_23 | vegetarian > omnivore | 1.34597 | 0.04602 |
| HRGMv2_0923_19_23 | vegetarian > vegan | 2.06369 | 0.01057 |