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Cluster: HRGMv2_0921_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0921_4 HRGMv2_0921_4_26 28936 30105 - CE9
STP HRGMv2_0921_4 HRGMv2_0921_4_27 30223 31389 - SIS | SIS
TF HRGMv2_0921_4 HRGMv2_0921_4_28 31504 32235 - GntR
TC HRGMv2_0921_4 HRGMv2_0921_4_29 32421 33503 - 4.A.6.1.4
TC HRGMv2_0921_4 HRGMv2_0921_4_30 33493 34293 - 4.A.6.1.4
TC HRGMv2_0921_4 HRGMv2_0921_4_31 34384 34866 - 4.A.6.1.4
pfam HRGMv2_0921_4 HRGMv2_0921_4_32 34903 35184 - YajC
TC HRGMv2_0921_4 HRGMv2_0921_4_33 35184 35627 - 4.A.6.1.16
Gene ID: HRGMv2_0921_4_26
Type: CAZyme
Location: 28936 - 30105 (-)
Gene ID: HRGMv2_0921_4_27
Type: STP
Location: 30223 - 31389 (-)
Gene ID: HRGMv2_0921_4_28
Type: TF
Location: 31504 - 32235 (-)
Gene ID: HRGMv2_0921_4_29
Type: TC
Location: 32421 - 33503 (-)
Gene ID: HRGMv2_0921_4_30
Type: TC
Location: 33493 - 34293 (-)
Gene ID: HRGMv2_0921_4_31
Type: TC
Location: 34384 - 34866 (-)
Gene ID: HRGMv2_0921_4_32
Type: pfam
Location: 34903 - 35184 (-)
Gene ID: HRGMv2_0921_4_33
Type: TC
Location: 35184 - 35627 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0921_4_32 vegan > omnivore 1.05374 0.01057

🧭 Explore Read Mapping of CGC

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