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Cluster: HRGMv2_0921_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0921_4 HRGMv2_0921_4_6 5616 5954 - 4.A.3.1.2
TF HRGMv2_0921_4 HRGMv2_0921_4_7 6169 7173 - LacI
TC HRGMv2_0921_4 HRGMv2_0921_4_8 7529 9301 + 4.A.3.1.1
CAZyme HRGMv2_0921_4 HRGMv2_0921_4_9 9368 10807 + GH1
TF HRGMv2_0921_4 HRGMv2_0921_4_10 11142 12152 - LacI
TC HRGMv2_0921_4 HRGMv2_0921_4_11 12428 14206 + 4.A.3.1.1
CAZyme HRGMv2_0921_4 HRGMv2_0921_4_12 14282 15703 + GH1
TF HRGMv2_0921_4 HRGMv2_0921_4_13 16442 17698 + 0043095
STP HRGMv2_0921_4 HRGMv2_0921_4_14 17699 18094 - DeoRC
TC HRGMv2_0921_4 HRGMv2_0921_4_15 18257 19951 - 4.A.3.1.1
Gene ID: HRGMv2_0921_4_6
Type: TC
Location: 5616 - 5954 (-)
Gene ID: HRGMv2_0921_4_7
Type: TF
Location: 6169 - 7173 (-)
Gene ID: HRGMv2_0921_4_8
Type: TC
Location: 7529 - 9301 (+)
Gene ID: HRGMv2_0921_4_9
Type: CAZyme
Location: 9368 - 10807 (+)
Gene ID: HRGMv2_0921_4_10
Type: TF
Location: 11142 - 12152 (-)
Gene ID: HRGMv2_0921_4_11
Type: TC
Location: 12428 - 14206 (+)
Gene ID: HRGMv2_0921_4_12
Type: CAZyme
Location: 14282 - 15703 (+)
Gene ID: HRGMv2_0921_4_13
Type: TF
Location: 16442 - 17698 (+)
Gene ID: HRGMv2_0921_4_14
Type: STP
Location: 17699 - 18094 (-)
Gene ID: HRGMv2_0921_4_15
Type: TC
Location: 18257 - 19951 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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