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Cluster: HRGMv2_0921_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0921_1 HRGMv2_0921_1_44 41544 42920 - GH13_20
TC HRGMv2_0921_1 HRGMv2_0921_1_45 43074 44270 - 2.A.1.2.18
TC HRGMv2_0921_1 HRGMv2_0921_1_46 44394 46754 - 9.A.8.1.6
peptidase HRGMv2_0921_1 HRGMv2_0921_1_47 47228 48127 - S09.UPW
TC HRGMv2_0921_1 HRGMv2_0921_1_48 48372 48935 + 4.A.1.2.6
pfam HRGMv2_0921_1 HRGMv2_0921_1_49 49117 50520 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0921_1 HRGMv2_0921_1_50 50780 51565 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0921_1 HRGMv2_0921_1_51 51726 52706 + 3.A.1.34.1
TC HRGMv2_0921_1 HRGMv2_0921_1_52 52911 53834 + 3.A.1.34.1
TC HRGMv2_0921_1 HRGMv2_0921_1_53 53827 54621 + 3.A.1.34.1
Gene ID: HRGMv2_0921_1_44
Type: CAZyme
Location: 41544 - 42920 (-)
Gene ID: HRGMv2_0921_1_45
Type: TC
Location: 43074 - 44270 (-)
Gene ID: HRGMv2_0921_1_46
Type: TC
Location: 44394 - 46754 (-)
Gene ID: HRGMv2_0921_1_47
Type: peptidase
Location: 47228 - 48127 (-)
Gene ID: HRGMv2_0921_1_48
Type: TC
Location: 48372 - 48935 (+)
Gene ID: HRGMv2_0921_1_49
Type: pfam
Location: 49117 - 50520 (+)
Gene ID: HRGMv2_0921_1_50
Type:
Location: 50780 - 51565 (+)
Gene ID: HRGMv2_0921_1_51
Type: TC
Location: 51726 - 52706 (+)
Gene ID: HRGMv2_0921_1_52
Type: TC
Location: 52911 - 53834 (+)
Gene ID: HRGMv2_0921_1_53
Type: TC
Location: 53827 - 54621 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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