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Cluster: HRGMv2_0920_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0920_11 HRGMv2_0920_11_42 40599 42293 + 4.A.3.1.1
STP HRGMv2_0920_11 HRGMv2_0920_11_43 42454 42795 + DeoRC
pfam HRGMv2_0920_11 HRGMv2_0920_11_44 42833 44065 - Fic
CAZyme HRGMv2_0920_11 HRGMv2_0920_11_45 44434 45855 - GH1
TC HRGMv2_0920_11 HRGMv2_0920_11_46 45931 47709 - 4.A.3.1.1
TF HRGMv2_0920_11 HRGMv2_0920_11_47 47985 48995 + LacI
TC HRGMv2_0920_11 HRGMv2_0920_11_48 49333 51093 - 4.A.3.1.1
CAZyme HRGMv2_0920_11 HRGMv2_0920_11_49 51270 52712 - GH1
TF HRGMv2_0920_11 HRGMv2_0920_11_50 53054 54091 + LacI
CAZyme HRGMv2_0920_11 HRGMv2_0920_11_51 54368 55807 - GH1
TC HRGMv2_0920_11 HRGMv2_0920_11_52 55874 57649 - 4.A.3.1.1
TF HRGMv2_0920_11 HRGMv2_0920_11_53 58007 59011 + LacI
TC HRGMv2_0920_11 HRGMv2_0920_11_54 59226 59564 + 4.A.3.1.2
Gene ID: HRGMv2_0920_11_42
Type: TC
Location: 40599 - 42293 (+)
Gene ID: HRGMv2_0920_11_43
Type: STP
Location: 42454 - 42795 (+)
Gene ID: HRGMv2_0920_11_44
Type: pfam
Location: 42833 - 44065 (-)
Gene ID: HRGMv2_0920_11_45
Type: CAZyme
Location: 44434 - 45855 (-)
Gene ID: HRGMv2_0920_11_46
Type: TC
Location: 45931 - 47709 (-)
Gene ID: HRGMv2_0920_11_47
Type: TF
Location: 47985 - 48995 (+)
Gene ID: HRGMv2_0920_11_48
Type: TC
Location: 49333 - 51093 (-)
Gene ID: HRGMv2_0920_11_49
Type: CAZyme
Location: 51270 - 52712 (-)
Gene ID: HRGMv2_0920_11_50
Type: TF
Location: 53054 - 54091 (+)
Gene ID: HRGMv2_0920_11_51
Type: CAZyme
Location: 54368 - 55807 (-)
Gene ID: HRGMv2_0920_11_52
Type: TC
Location: 55874 - 57649 (-)
Gene ID: HRGMv2_0920_11_53
Type: TF
Location: 58007 - 59011 (+)
Gene ID: HRGMv2_0920_11_54
Type: TC
Location: 59226 - 59564 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0920_11_50 vegetarian > omnivore 1.05406 0.02677

🧭 Explore Read Mapping of CGC

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