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Cluster: HRGMv2_0920_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0920_11 HRGMv2_0920_11_25 24404 24847 + 4.A.6.1.16
pfam HRGMv2_0920_11 HRGMv2_0920_11_26 24847 25128 + YajC
TC HRGMv2_0920_11 HRGMv2_0920_11_27 25165 25647 + 4.A.6.1.4
TC HRGMv2_0920_11 HRGMv2_0920_11_28 25738 26538 + 4.A.6.1.4
TC HRGMv2_0920_11 HRGMv2_0920_11_29 26528 27610 + 4.A.6.1.4
TF HRGMv2_0920_11 HRGMv2_0920_11_30 27796 28527 + GntR
STP HRGMv2_0920_11 HRGMv2_0920_11_31 28642 29808 + SIS | SIS
CAZyme HRGMv2_0920_11 HRGMv2_0920_11_32 29929 31098 + CE9
Gene ID: HRGMv2_0920_11_25
Type: TC
Location: 24404 - 24847 (+)
Gene ID: HRGMv2_0920_11_26
Type: pfam
Location: 24847 - 25128 (+)
Gene ID: HRGMv2_0920_11_27
Type: TC
Location: 25165 - 25647 (+)
Gene ID: HRGMv2_0920_11_28
Type: TC
Location: 25738 - 26538 (+)
Gene ID: HRGMv2_0920_11_29
Type: TC
Location: 26528 - 27610 (+)
Gene ID: HRGMv2_0920_11_30
Type: TF
Location: 27796 - 28527 (+)
Gene ID: HRGMv2_0920_11_31
Type: STP
Location: 28642 - 29808 (+)
Gene ID: HRGMv2_0920_11_32
Type: CAZyme
Location: 29929 - 31098 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0920_11_26 vegan > omnivore 1.03102 0.00701

🧭 Explore Read Mapping of CGC

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