dbCAN Logo

Cluster: HRGMv2_0918_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0918_22 HRGMv2_0918_22_8 7030 7368 - 4.A.3.1.2
TF HRGMv2_0918_22 HRGMv2_0918_22_9 7583 8587 - LacI
TC HRGMv2_0918_22 HRGMv2_0918_22_10 8945 10720 + 4.A.3.1.1
CAZyme HRGMv2_0918_22 HRGMv2_0918_22_11 10787 12226 + GH1
TF HRGMv2_0918_22 HRGMv2_0918_22_12 12494 13531 - LacI
CAZyme HRGMv2_0918_22 HRGMv2_0918_22_13 13873 15315 + GH1
TC HRGMv2_0918_22 HRGMv2_0918_22_14 15492 17252 + 4.A.3.1.1
TF HRGMv2_0918_22 HRGMv2_0918_22_15 17666 18676 - LacI
TC HRGMv2_0918_22 HRGMv2_0918_22_16 18953 20731 + 4.A.3.1.1
CAZyme HRGMv2_0918_22 HRGMv2_0918_22_17 20808 22229 + GH1
Gene ID: HRGMv2_0918_22_8
Type: TC
Location: 7030 - 7368 (-)
Gene ID: HRGMv2_0918_22_9
Type: TF
Location: 7583 - 8587 (-)
Gene ID: HRGMv2_0918_22_10
Type: TC
Location: 8945 - 10720 (+)
Gene ID: HRGMv2_0918_22_11
Type: CAZyme
Location: 10787 - 12226 (+)
Gene ID: HRGMv2_0918_22_12
Type: TF
Location: 12494 - 13531 (-)
Gene ID: HRGMv2_0918_22_13
Type: CAZyme
Location: 13873 - 15315 (+)
Gene ID: HRGMv2_0918_22_14
Type: TC
Location: 15492 - 17252 (+)
Gene ID: HRGMv2_0918_22_15
Type: TF
Location: 17666 - 18676 (-)
Gene ID: HRGMv2_0918_22_16
Type: TC
Location: 18953 - 20731 (+)
Gene ID: HRGMv2_0918_22_17
Type: CAZyme
Location: 20808 - 22229 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0918_22_12 vegetarian > omnivore 1.01007 0.03181

🧭 Explore Read Mapping of CGC

← Back to Cluster List