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Cluster: HRGMv2_0918_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0918_11 HRGMv2_0918_11_18 18212 18655 + 4.A.6.1.16
pfam HRGMv2_0918_11 HRGMv2_0918_11_19 18655 18936 + YajC
TC HRGMv2_0918_11 HRGMv2_0918_11_20 18973 19455 + 4.A.6.1.4
TC HRGMv2_0918_11 HRGMv2_0918_11_21 19546 20346 + 4.A.6.1.4
TC HRGMv2_0918_11 HRGMv2_0918_11_22 20336 21418 + 4.A.6.1.4
TF HRGMv2_0918_11 HRGMv2_0918_11_23 21604 22335 + GntR
STP HRGMv2_0918_11 HRGMv2_0918_11_24 22450 23616 + SIS | SIS
CAZyme HRGMv2_0918_11 HRGMv2_0918_11_25 23734 24903 + CE9
Gene ID: HRGMv2_0918_11_18
Type: TC
Location: 18212 - 18655 (+)
Gene ID: HRGMv2_0918_11_19
Type: pfam
Location: 18655 - 18936 (+)
Gene ID: HRGMv2_0918_11_20
Type: TC
Location: 18973 - 19455 (+)
Gene ID: HRGMv2_0918_11_21
Type: TC
Location: 19546 - 20346 (+)
Gene ID: HRGMv2_0918_11_22
Type: TC
Location: 20336 - 21418 (+)
Gene ID: HRGMv2_0918_11_23
Type: TF
Location: 21604 - 22335 (+)
Gene ID: HRGMv2_0918_11_24
Type: STP
Location: 22450 - 23616 (+)
Gene ID: HRGMv2_0918_11_25
Type: CAZyme
Location: 23734 - 24903 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0918_11_19 vegan > omnivore 1.08907 0.00566

🧭 Explore Read Mapping of CGC

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