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Cluster: HRGMv2_0918_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0918_8 HRGMv2_0918_8_2 1891 2658 - 1.A.23.4.2
TC HRGMv2_0918_8 HRGMv2_0918_8_3 2938 3732 - 3.A.1.34.1
TC HRGMv2_0918_8 HRGMv2_0918_8_4 3725 4648 - 3.A.1.34.1
TC HRGMv2_0918_8 HRGMv2_0918_8_5 4853 5833 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0918_8 HRGMv2_0918_8_6 5994 6779 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0918_8 HRGMv2_0918_8_7 7029 8432 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0918_8 HRGMv2_0918_8_8 8614 9177 - 4.A.1.2.6
peptidase HRGMv2_0918_8 HRGMv2_0918_8_9 9421 10323 + S09.UPW
TC HRGMv2_0918_8 HRGMv2_0918_8_10 10686 13046 + 9.A.8.1.6
TC HRGMv2_0918_8 HRGMv2_0918_8_11 13167 14363 + 2.A.1.2.18
CAZyme HRGMv2_0918_8 HRGMv2_0918_8_12 14518 15894 + GH13_20
Gene ID: HRGMv2_0918_8_2
Type: TC
Location: 1891 - 2658 (-)
Gene ID: HRGMv2_0918_8_3
Type: TC
Location: 2938 - 3732 (-)
Gene ID: HRGMv2_0918_8_4
Type: TC
Location: 3725 - 4648 (-)
Gene ID: HRGMv2_0918_8_5
Type: TC
Location: 4853 - 5833 (-)
Gene ID: HRGMv2_0918_8_6
Type:
Location: 5994 - 6779 (-)
Gene ID: HRGMv2_0918_8_7
Type: pfam
Location: 7029 - 8432 (-)
Gene ID: HRGMv2_0918_8_8
Type: TC
Location: 8614 - 9177 (-)
Gene ID: HRGMv2_0918_8_9
Type: peptidase
Location: 9421 - 10323 (+)
Gene ID: HRGMv2_0918_8_10
Type: TC
Location: 10686 - 13046 (+)
Gene ID: HRGMv2_0918_8_11
Type: TC
Location: 13167 - 14363 (+)
Gene ID: HRGMv2_0918_8_12
Type: CAZyme
Location: 14518 - 15894 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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