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Cluster: HRGMv2_0917_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0917_37 HRGMv2_0917_37_5 3034 4203 - CE9
STP HRGMv2_0917_37 HRGMv2_0917_37_6 4321 5487 - SIS | SIS
TF HRGMv2_0917_37 HRGMv2_0917_37_7 5602 6333 - GntR
TC HRGMv2_0917_37 HRGMv2_0917_37_8 6519 7601 - 4.A.6.1.4
TC HRGMv2_0917_37 HRGMv2_0917_37_9 7591 8391 - 4.A.6.1.4
TC HRGMv2_0917_37 HRGMv2_0917_37_10 8482 8964 - 4.A.6.1.4
pfam HRGMv2_0917_37 HRGMv2_0917_37_11 9001 9282 - YajC
TC HRGMv2_0917_37 HRGMv2_0917_37_12 9282 9725 - 4.A.6.1.16
Gene ID: HRGMv2_0917_37_5
Type: CAZyme
Location: 3034 - 4203 (-)
Gene ID: HRGMv2_0917_37_6
Type: STP
Location: 4321 - 5487 (-)
Gene ID: HRGMv2_0917_37_7
Type: TF
Location: 5602 - 6333 (-)
Gene ID: HRGMv2_0917_37_8
Type: TC
Location: 6519 - 7601 (-)
Gene ID: HRGMv2_0917_37_9
Type: TC
Location: 7591 - 8391 (-)
Gene ID: HRGMv2_0917_37_10
Type: TC
Location: 8482 - 8964 (-)
Gene ID: HRGMv2_0917_37_11
Type: pfam
Location: 9001 - 9282 (-)
Gene ID: HRGMv2_0917_37_12
Type: TC
Location: 9282 - 9725 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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