Cluster: HRGMv2_0916_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0916
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_129 | 134254 | 135495 | + | GT111 |
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_130 | 135571 | 137970 | + | GT2 | GT2 |
| pfam | HRGMv2_0916_2 | HRGMv2_0916_2_131 | 138049 | 140232 | - | DUF7654 | DUF7657 |
| pfam | HRGMv2_0916_2 | HRGMv2_0916_2_132 | 140258 | 140614 | - | DUF2304 |
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_133 | 140611 | 141324 | - | GT2 |
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_134 | 141351 | 142592 | - | GT4 |
| pfam | HRGMv2_0916_2 | HRGMv2_0916_2_135 | 142592 | 143767 | - | Epimerase_2 |
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_136 | 143788 | 144852 | - | GT4 |
| pfam | HRGMv2_0916_2 | HRGMv2_0916_2_137 | 144912 | 146129 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_0916_2 | HRGMv2_0916_2_138 | 146131 | 147186 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_0916_2 | HRGMv2_0916_2_139 | 147417 | 147932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0916_2 | HRGMv2_0916_2_140 | 148681 | 151461 | - | GH73 |
Gene ID: HRGMv2_0916_2_129
Type: CAZyme
Location: 134254 - 135495 (+)
Type: CAZyme
Location: 134254 - 135495 (+)
Gene ID: HRGMv2_0916_2_130
Type: CAZyme
Location: 135571 - 137970 (+)
Type: CAZyme
Location: 135571 - 137970 (+)
Gene ID: HRGMv2_0916_2_131
Type: pfam
Location: 138049 - 140232 (-)
Type: pfam
Location: 138049 - 140232 (-)
Gene ID: HRGMv2_0916_2_132
Type: pfam
Location: 140258 - 140614 (-)
Type: pfam
Location: 140258 - 140614 (-)
Gene ID: HRGMv2_0916_2_133
Type: CAZyme
Location: 140611 - 141324 (-)
Type: CAZyme
Location: 140611 - 141324 (-)
Gene ID: HRGMv2_0916_2_134
Type: CAZyme
Location: 141351 - 142592 (-)
Type: CAZyme
Location: 141351 - 142592 (-)
Gene ID: HRGMv2_0916_2_135
Type: pfam
Location: 142592 - 143767 (-)
Type: pfam
Location: 142592 - 143767 (-)
Gene ID: HRGMv2_0916_2_136
Type: CAZyme
Location: 143788 - 144852 (-)
Type: CAZyme
Location: 143788 - 144852 (-)
Gene ID: HRGMv2_0916_2_137
Type: pfam
Location: 144912 - 146129 (-)
Type: pfam
Location: 144912 - 146129 (-)
Gene ID: HRGMv2_0916_2_138
Type: TC
Location: 146131 - 147186 (-)
Type: TC
Location: 146131 - 147186 (-)
Gene ID: HRGMv2_0916_2_139
Type:
Location: 147417 - 147932 (-)
Type:
Location: 147417 - 147932 (-)
Gene ID: HRGMv2_0916_2_140
Type: CAZyme
Location: 148681 - 151461 (-)
Type: CAZyme
Location: 148681 - 151461 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902491915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0916_2_129 | vegan > omnivore | 1.12701 | 0.00863 |
| HRGMv2_0916_2_129 | vegetarian > omnivore | 1.90338 | 0.02615 |
| HRGMv2_0916_2_130 | vegan > omnivore | 2.33797 | 0.00863 |
| HRGMv2_0916_2_130 | vegetarian > omnivore | 3.13510 | 0.02615 |
| HRGMv2_0916_2_133 | vegan > omnivore | 1.57865 | 0.00863 |
| HRGMv2_0916_2_133 | vegetarian > omnivore | 2.65108 | 0.02615 |
| HRGMv2_0916_2_134 | vegetarian > omnivore | 1.38713 | 0.02615 |
| HRGMv2_0916_2_136 | vegan > omnivore | 2.33743 | 0.00863 |
| HRGMv2_0916_2_136 | vegetarian > omnivore | 3.16184 | 0.02615 |
| HRGMv2_0916_2_137 | vegetarian > omnivore | 1.35653 | 0.02615 |
| HRGMv2_0916_2_137 | vegetarian > vegan | 1.96507 | 0.01141 |
| HRGMv2_0916_2_139 | vegan > omnivore | 1.05714 | 0.00863 |
| HRGMv2_0916_2_139 | vegetarian > omnivore | 2.06003 | 0.02615 |
| HRGMv2_0916_2_140 | vegan > omnivore | 1.43403 | 0.00863 |
| HRGMv2_0916_2_140 | vegetarian > omnivore | 2.22368 | 0.01185 |