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Cluster: HRGMv2_0916_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0916_22 HRGMv2_0916_22_24 28008 29177 - CE9
STP HRGMv2_0916_22 HRGMv2_0916_22_25 29296 30462 - SIS | SIS
TF HRGMv2_0916_22 HRGMv2_0916_22_26 30577 31308 - GntR
TC HRGMv2_0916_22 HRGMv2_0916_22_27 31494 32576 - 4.A.6.1.4
TC HRGMv2_0916_22 HRGMv2_0916_22_28 32566 33366 - 4.A.6.1.4
TC HRGMv2_0916_22 HRGMv2_0916_22_29 33457 33939 - 4.A.6.1.4
pfam HRGMv2_0916_22 HRGMv2_0916_22_30 33976 34257 - YajC
TC HRGMv2_0916_22 HRGMv2_0916_22_31 34257 34700 - 4.A.6.1.16
Gene ID: HRGMv2_0916_22_24
Type: CAZyme
Location: 28008 - 29177 (-)
Gene ID: HRGMv2_0916_22_25
Type: STP
Location: 29296 - 30462 (-)
Gene ID: HRGMv2_0916_22_26
Type: TF
Location: 30577 - 31308 (-)
Gene ID: HRGMv2_0916_22_27
Type: TC
Location: 31494 - 32576 (-)
Gene ID: HRGMv2_0916_22_28
Type: TC
Location: 32566 - 33366 (-)
Gene ID: HRGMv2_0916_22_29
Type: TC
Location: 33457 - 33939 (-)
Gene ID: HRGMv2_0916_22_30
Type: pfam
Location: 33976 - 34257 (-)
Gene ID: HRGMv2_0916_22_31
Type: TC
Location: 34257 - 34700 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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