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Cluster: HRGMv2_0916_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0916_16 HRGMv2_0916_16_12 12985 14385 + GH1
TC HRGMv2_0916_16 HRGMv2_0916_16_13 14506 15849 + 4.A.3.2.9
TC HRGMv2_0916_16 HRGMv2_0916_16_14 16011 16313 + 4.A.3.2.9
TC HRGMv2_0916_16 HRGMv2_0916_16_15 16323 16655 + 4.A.3.2.3
pfam HRGMv2_0916_16 HRGMv2_0916_16_16 16897 17850 + ROK
pfam HRGMv2_0916_16 HRGMv2_0916_16_17 18017 18940 + DHH | DHHA2
TC HRGMv2_0916_16 HRGMv2_0916_16_18 19209 20567 + 2.A.33.1.1
Gene ID: HRGMv2_0916_16_12
Type: CAZyme
Location: 12985 - 14385 (+)
Gene ID: HRGMv2_0916_16_13
Type: TC
Location: 14506 - 15849 (+)
Gene ID: HRGMv2_0916_16_14
Type: TC
Location: 16011 - 16313 (+)
Gene ID: HRGMv2_0916_16_15
Type: TC
Location: 16323 - 16655 (+)
Gene ID: HRGMv2_0916_16_16
Type: pfam
Location: 16897 - 17850 (+)
Gene ID: HRGMv2_0916_16_17
Type: pfam
Location: 18017 - 18940 (+)
Gene ID: HRGMv2_0916_16_18
Type: TC
Location: 19209 - 20567 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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