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Cluster: HRGMv2_0915_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0915_28 HRGMv2_0915_28_5 3434 3877 + 4.A.6.1.16
pfam HRGMv2_0915_28 HRGMv2_0915_28_6 3877 4158 + YajC
TC HRGMv2_0915_28 HRGMv2_0915_28_7 4195 4677 + 4.A.6.1.4
TC HRGMv2_0915_28 HRGMv2_0915_28_8 4768 5568 + 4.A.6.1.4
TC HRGMv2_0915_28 HRGMv2_0915_28_9 5558 6640 + 4.A.6.1.4
TF HRGMv2_0915_28 HRGMv2_0915_28_10 6826 7557 + GntR
STP HRGMv2_0915_28 HRGMv2_0915_28_11 7672 8838 + SIS | SIS
CAZyme HRGMv2_0915_28 HRGMv2_0915_28_12 8957 10126 + CE9
Gene ID: HRGMv2_0915_28_5
Type: TC
Location: 3434 - 3877 (+)
Gene ID: HRGMv2_0915_28_6
Type: pfam
Location: 3877 - 4158 (+)
Gene ID: HRGMv2_0915_28_7
Type: TC
Location: 4195 - 4677 (+)
Gene ID: HRGMv2_0915_28_8
Type: TC
Location: 4768 - 5568 (+)
Gene ID: HRGMv2_0915_28_9
Type: TC
Location: 5558 - 6640 (+)
Gene ID: HRGMv2_0915_28_10
Type: TF
Location: 6826 - 7557 (+)
Gene ID: HRGMv2_0915_28_11
Type: STP
Location: 7672 - 8838 (+)
Gene ID: HRGMv2_0915_28_12
Type: CAZyme
Location: 8957 - 10126 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0915_28_6 vegan > omnivore 1.03940 0.00701

🧭 Explore Read Mapping of CGC

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