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Cluster: HRGMv2_0915_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0915_41 HRGMv2_0915_41_3 2555 5008 - 4.A.1.1.8
TF HRGMv2_0915_41 HRGMv2_0915_41_4 5236 5955 + GntR
TC HRGMv2_0915_41 HRGMv2_0915_41_5 6262 7578 + 3.A.1.1.45
TC HRGMv2_0915_41 HRGMv2_0915_41_6 7666 8520 + 3.A.1.1.45
TC HRGMv2_0915_41 HRGMv2_0915_41_7 8520 9359 + 3.A.1.1.45
TC HRGMv2_0915_41 HRGMv2_0915_41_8 9427 10626 + 3.A.1.1.22
CAZyme HRGMv2_0915_41 HRGMv2_0915_41_9 11161 13428 - GT35
CAZyme HRGMv2_0915_41 HRGMv2_0915_41_10 13557 15062 - GH77
Gene ID: HRGMv2_0915_41_3
Type: TC
Location: 2555 - 5008 (-)
Gene ID: HRGMv2_0915_41_4
Type: TF
Location: 5236 - 5955 (+)
Gene ID: HRGMv2_0915_41_5
Type: TC
Location: 6262 - 7578 (+)
Gene ID: HRGMv2_0915_41_6
Type: TC
Location: 7666 - 8520 (+)
Gene ID: HRGMv2_0915_41_7
Type: TC
Location: 8520 - 9359 (+)
Gene ID: HRGMv2_0915_41_8
Type: TC
Location: 9427 - 10626 (+)
Gene ID: HRGMv2_0915_41_9
Type: CAZyme
Location: 11161 - 13428 (-)
Gene ID: HRGMv2_0915_41_10
Type: CAZyme
Location: 13557 - 15062 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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