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Cluster: HRGMv2_0912_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0912_17 HRGMv2_0912_17_2 1032 3281 + 1.I.1.1.3
NULL(UNKNOWN) HRGMv2_0912_17 HRGMv2_0912_17_3 3206 3796 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_0912_17 HRGMv2_0912_17_4 3899 4660 + Fer4
TC HRGMv2_0912_17 HRGMv2_0912_17_5 5004 5516 + 4.A.1.2.11
pfam HRGMv2_0912_17 HRGMv2_0912_17_6 5523 6176 + PRD | CAT_RBD
TC HRGMv2_0912_17 HRGMv2_0912_17_7 6489 8105 + 4.A.1.1.3
CAZyme HRGMv2_0912_17 HRGMv2_0912_17_8 8109 9491 + GH4
peptidase HRGMv2_0912_17 HRGMv2_0912_17_9 9684 10604 + G05.UPW
pfam HRGMv2_0912_17 HRGMv2_0912_17_10 10601 12736 - Radical_SAM_N | DUF3362
TC HRGMv2_0912_17 HRGMv2_0912_17_11 12999 13715 + 9.B.143.2.3
Gene ID: HRGMv2_0912_17_2
Type: TC
Location: 1032 - 3281 (+)
Gene ID: HRGMv2_0912_17_3
Type:
Location: 3206 - 3796 (-)
Gene ID: HRGMv2_0912_17_4
Type: STP
Location: 3899 - 4660 (+)
Gene ID: HRGMv2_0912_17_5
Type: TC
Location: 5004 - 5516 (+)
Gene ID: HRGMv2_0912_17_6
Type: pfam
Location: 5523 - 6176 (+)
Gene ID: HRGMv2_0912_17_7
Type: TC
Location: 6489 - 8105 (+)
Gene ID: HRGMv2_0912_17_8
Type: CAZyme
Location: 8109 - 9491 (+)
Gene ID: HRGMv2_0912_17_9
Type: peptidase
Location: 9684 - 10604 (+)
Gene ID: HRGMv2_0912_17_10
Type: pfam
Location: 10601 - 12736 (-)
Gene ID: HRGMv2_0912_17_11
Type: TC
Location: 12999 - 13715 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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