Cluster: HRGMv2_0908_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0908_17 | HRGMv2_0908_17_8 | 7158 | 8564 | + | CE4 |
| STP | HRGMv2_0908_17 | HRGMv2_0908_17_9 | 8893 | 10737 | + | CBS | CBS |
| TC | HRGMv2_0908_17 | HRGMv2_0908_17_10 | 10746 | 12008 | + | 2.A.55.3.6 |
| TC | HRGMv2_0908_17 | HRGMv2_0908_17_11 | 12526 | 14769 | - | 9.B.97.5.1 |
Gene ID: HRGMv2_0908_17_8
Type: CAZyme
Location: 7158 - 8564 (+)
Type: CAZyme
Location: 7158 - 8564 (+)
Gene ID: HRGMv2_0908_17_9
Type: STP
Location: 8893 - 10737 (+)
Type: STP
Location: 8893 - 10737 (+)
Gene ID: HRGMv2_0908_17_10
Type: TC
Location: 10746 - 12008 (+)
Type: TC
Location: 10746 - 12008 (+)
Gene ID: HRGMv2_0908_17_11
Type: TC
Location: 12526 - 14769 (-)
Type: TC
Location: 12526 - 14769 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.