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Cluster: HRGMv2_0908_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0908_10 HRGMv2_0908_10_34 40268 41437 - CE9
STP HRGMv2_0908_10 HRGMv2_0908_10_35 41556 42722 - SIS | SIS
TF HRGMv2_0908_10 HRGMv2_0908_10_36 42837 43568 - GntR
TC HRGMv2_0908_10 HRGMv2_0908_10_37 43754 44836 - 4.A.6.1.4
TC HRGMv2_0908_10 HRGMv2_0908_10_38 44826 45626 - 4.A.6.1.4
TC HRGMv2_0908_10 HRGMv2_0908_10_39 45717 46199 - 4.A.6.1.4
pfam HRGMv2_0908_10 HRGMv2_0908_10_40 46236 46517 - YajC
TC HRGMv2_0908_10 HRGMv2_0908_10_41 46517 46960 - 4.A.6.1.16
Gene ID: HRGMv2_0908_10_34
Type: CAZyme
Location: 40268 - 41437 (-)
Gene ID: HRGMv2_0908_10_35
Type: STP
Location: 41556 - 42722 (-)
Gene ID: HRGMv2_0908_10_36
Type: TF
Location: 42837 - 43568 (-)
Gene ID: HRGMv2_0908_10_37
Type: TC
Location: 43754 - 44836 (-)
Gene ID: HRGMv2_0908_10_38
Type: TC
Location: 44826 - 45626 (-)
Gene ID: HRGMv2_0908_10_39
Type: TC
Location: 45717 - 46199 (-)
Gene ID: HRGMv2_0908_10_40
Type: pfam
Location: 46236 - 46517 (-)
Gene ID: HRGMv2_0908_10_41
Type: TC
Location: 46517 - 46960 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0908_10_40 vegan > omnivore 1.02268 0.00701

🧭 Explore Read Mapping of CGC

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