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Cluster: HRGMv2_0908_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0908_10 HRGMv2_0908_10_12 12388 12726 - 4.A.3.1.2
TF HRGMv2_0908_10 HRGMv2_0908_10_13 12941 13945 - LacI
TC HRGMv2_0908_10 HRGMv2_0908_10_14 14303 16078 + 4.A.3.1.1
CAZyme HRGMv2_0908_10 HRGMv2_0908_10_15 16145 17584 + GH1
TF HRGMv2_0908_10 HRGMv2_0908_10_16 17847 18884 - LacI
CAZyme HRGMv2_0908_10 HRGMv2_0908_10_17 19226 20668 + GH1
TC HRGMv2_0908_10 HRGMv2_0908_10_18 20845 22605 + 4.A.3.1.1
TF HRGMv2_0908_10 HRGMv2_0908_10_19 22864 23874 - LacI
TC HRGMv2_0908_10 HRGMv2_0908_10_20 24151 25938 + 4.A.3.1.1
CAZyme HRGMv2_0908_10 HRGMv2_0908_10_21 26014 27435 + GH1
pfam HRGMv2_0908_10 HRGMv2_0908_10_22 27803 29035 + Fic
STP HRGMv2_0908_10 HRGMv2_0908_10_23 29141 29536 - DeoRC
TC HRGMv2_0908_10 HRGMv2_0908_10_24 29699 31393 - 4.A.3.1.1
Gene ID: HRGMv2_0908_10_12
Type: TC
Location: 12388 - 12726 (-)
Gene ID: HRGMv2_0908_10_13
Type: TF
Location: 12941 - 13945 (-)
Gene ID: HRGMv2_0908_10_14
Type: TC
Location: 14303 - 16078 (+)
Gene ID: HRGMv2_0908_10_15
Type: CAZyme
Location: 16145 - 17584 (+)
Gene ID: HRGMv2_0908_10_16
Type: TF
Location: 17847 - 18884 (-)
Gene ID: HRGMv2_0908_10_17
Type: CAZyme
Location: 19226 - 20668 (+)
Gene ID: HRGMv2_0908_10_18
Type: TC
Location: 20845 - 22605 (+)
Gene ID: HRGMv2_0908_10_19
Type: TF
Location: 22864 - 23874 (-)
Gene ID: HRGMv2_0908_10_20
Type: TC
Location: 24151 - 25938 (+)
Gene ID: HRGMv2_0908_10_21
Type: CAZyme
Location: 26014 - 27435 (+)
Gene ID: HRGMv2_0908_10_22
Type: pfam
Location: 27803 - 29035 (+)
Gene ID: HRGMv2_0908_10_23
Type: STP
Location: 29141 - 29536 (-)
Gene ID: HRGMv2_0908_10_24
Type: TC
Location: 29699 - 31393 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0908_10_16 vegetarian > omnivore 1.00892 0.03181

🧭 Explore Read Mapping of CGC

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