Cluster: HRGMv2_0908_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0908_7 | HRGMv2_0908_7_23 | 29139 | 30158 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0908_7 | HRGMv2_0908_7_24 | 30168 | 31574 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0908_7 | HRGMv2_0908_7_25 | 31611 | 33104 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0908_7 | HRGMv2_0908_7_26 | 33094 | 34209 | + | GT28 |
Gene ID: HRGMv2_0908_7_23
Type: TC
Location: 29139 - 30158 (+)
Type: TC
Location: 29139 - 30158 (+)
Gene ID: HRGMv2_0908_7_24
Type: pfam
Location: 30168 - 31574 (+)
Type: pfam
Location: 30168 - 31574 (+)
Gene ID: HRGMv2_0908_7_25
Type: TC
Location: 31611 - 33104 (+)
Type: TC
Location: 31611 - 33104 (+)
Gene ID: HRGMv2_0908_7_26
Type: CAZyme
Location: 33094 - 34209 (+)
Type: CAZyme
Location: 33094 - 34209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.