Cluster: HRGMv2_0908_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0908_5 | HRGMv2_0908_5_17 | 18694 | 20253 | + | 2.A.2.5.1 |
| CAZyme | HRGMv2_0908_5 | HRGMv2_0908_5_18 | 20369 | 21964 | + | GH28 |
| CAZyme | HRGMv2_0908_5 | HRGMv2_0908_5_19 | 22099 | 24264 | + | CE19 | CE8 |
| pfam | HRGMv2_0908_5 | HRGMv2_0908_5_20 | 24334 | 25002 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0908_5 | HRGMv2_0908_5_21 | 25110 | 26348 | + | GH105 |
Gene ID: HRGMv2_0908_5_17
Type: TC
Location: 18694 - 20253 (+)
Type: TC
Location: 18694 - 20253 (+)
Gene ID: HRGMv2_0908_5_18
Type: CAZyme
Location: 20369 - 21964 (+)
Type: CAZyme
Location: 20369 - 21964 (+)
Gene ID: HRGMv2_0908_5_19
Type: CAZyme
Location: 22099 - 24264 (+)
Type: CAZyme
Location: 22099 - 24264 (+)
Gene ID: HRGMv2_0908_5_20
Type: pfam
Location: 24334 - 25002 (+)
Type: pfam
Location: 24334 - 25002 (+)
Gene ID: HRGMv2_0908_5_21
Type: CAZyme
Location: 25110 - 26348 (+)
Type: CAZyme
Location: 25110 - 26348 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.