Cluster: HRGMv2_0908_CGC15
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0908_45 | HRGMv2_0908_45_10 | 9677 | 10444 | - | 3.A.1.103.1 |
| TC | HRGMv2_0908_45 | HRGMv2_0908_45_11 | 10456 | 11301 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_0908_45 | HRGMv2_0908_45_12 | 11462 | 12433 | + | GT81 |
Gene ID: HRGMv2_0908_45_10
Type: TC
Location: 9677 - 10444 (-)
Type: TC
Location: 9677 - 10444 (-)
Gene ID: HRGMv2_0908_45_11
Type: TC
Location: 10456 - 11301 (-)
Type: TC
Location: 10456 - 11301 (-)
Gene ID: HRGMv2_0908_45_12
Type: CAZyme
Location: 11462 - 12433 (+)
Type: CAZyme
Location: 11462 - 12433 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.