Cluster: HRGMv2_0908_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0908_36 | HRGMv2_0908_36_1 | 2 | 676 | + | 3.A.1.1.45 |
| TC | HRGMv2_0908_36 | HRGMv2_0908_36_2 | 676 | 1515 | + | 3.A.1.1.45 |
| TC | HRGMv2_0908_36 | HRGMv2_0908_36_3 | 1584 | 2783 | + | 3.A.1.1.22 |
| CAZyme | HRGMv2_0908_36 | HRGMv2_0908_36_4 | 3241 | 5508 | - | GT35 |
| CAZyme | HRGMv2_0908_36 | HRGMv2_0908_36_5 | 5637 | 7142 | - | GH77 |
Gene ID: HRGMv2_0908_36_1
Type: TC
Location: 2 - 676 (+)
Type: TC
Location: 2 - 676 (+)
Gene ID: HRGMv2_0908_36_2
Type: TC
Location: 676 - 1515 (+)
Type: TC
Location: 676 - 1515 (+)
Gene ID: HRGMv2_0908_36_3
Type: TC
Location: 1584 - 2783 (+)
Type: TC
Location: 1584 - 2783 (+)
Gene ID: HRGMv2_0908_36_4
Type: CAZyme
Location: 3241 - 5508 (-)
Type: CAZyme
Location: 3241 - 5508 (-)
Gene ID: HRGMv2_0908_36_5
Type: CAZyme
Location: 5637 - 7142 (-)
Type: CAZyme
Location: 5637 - 7142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.