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Cluster: HRGMv2_0908_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0908_22 HRGMv2_0908_22_17 17418 18344 - CE7
TC HRGMv2_0908_22 HRGMv2_0908_22_18 18476 19303 - 3.A.1.5.27
TC HRGMv2_0908_22 HRGMv2_0908_22_19 19304 21319 - 3.A.1.5.25
TC HRGMv2_0908_22 HRGMv2_0908_22_20 21323 22279 - 3.A.1.5.38
TC HRGMv2_0908_22 HRGMv2_0908_22_21 22435 24048 - 3.A.1.5.27
pfam HRGMv2_0908_22 HRGMv2_0908_22_22 24414 26354 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_0908_22 HRGMv2_0908_22_23 26361 28664 - 2.A.66.4.4
pfam HRGMv2_0908_22 HRGMv2_0908_22_24 28668 29168 - tRNA_edit
pfam HRGMv2_0908_22 HRGMv2_0908_22_25 29302 32181 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_0908_22 HRGMv2_0908_22_26 32441 33271 + 3.A.1.132.3
Gene ID: HRGMv2_0908_22_17
Type: CAZyme
Location: 17418 - 18344 (-)
Gene ID: HRGMv2_0908_22_18
Type: TC
Location: 18476 - 19303 (-)
Gene ID: HRGMv2_0908_22_19
Type: TC
Location: 19304 - 21319 (-)
Gene ID: HRGMv2_0908_22_20
Type: TC
Location: 21323 - 22279 (-)
Gene ID: HRGMv2_0908_22_21
Type: TC
Location: 22435 - 24048 (-)
Gene ID: HRGMv2_0908_22_22
Type: pfam
Location: 24414 - 26354 (-)
Gene ID: HRGMv2_0908_22_23
Type: TC
Location: 26361 - 28664 (-)
Gene ID: HRGMv2_0908_22_24
Type: pfam
Location: 28668 - 29168 (-)
Gene ID: HRGMv2_0908_22_25
Type: pfam
Location: 29302 - 32181 (-)
Gene ID: HRGMv2_0908_22_26
Type: TC
Location: 32441 - 33271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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