Cluster: HRGMv2_0908_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0908
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0908_20 | HRGMv2_0908_20_25 | 24976 | 25995 | + | GH109 |
| pfam | HRGMv2_0908_20 | HRGMv2_0908_20_26 | 26148 | 27014 | + | AP_endonuc_2 |
| TC | HRGMv2_0908_20 | HRGMv2_0908_20_27 | 27162 | 28022 | + | 3.A.1.3.15 |
| TC | HRGMv2_0908_20 | HRGMv2_0908_20_28 | 28140 | 29501 | + | 3.A.1.3.16 |
| TC | HRGMv2_0908_20 | HRGMv2_0908_20_29 | 29514 | 30266 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_0908_20_25
Type: CAZyme
Location: 24976 - 25995 (+)
Type: CAZyme
Location: 24976 - 25995 (+)
Gene ID: HRGMv2_0908_20_26
Type: pfam
Location: 26148 - 27014 (+)
Type: pfam
Location: 26148 - 27014 (+)
Gene ID: HRGMv2_0908_20_27
Type: TC
Location: 27162 - 28022 (+)
Type: TC
Location: 27162 - 28022 (+)
Gene ID: HRGMv2_0908_20_28
Type: TC
Location: 28140 - 29501 (+)
Type: TC
Location: 28140 - 29501 (+)
Gene ID: HRGMv2_0908_20_29
Type: TC
Location: 29514 - 30266 (+)
Type: TC
Location: 29514 - 30266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.