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Cluster: HRGMv2_0908_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0908_2 HRGMv2_0908_2_55 60930 62306 - GH13_20
TC HRGMv2_0908_2 HRGMv2_0908_2_56 62459 63655 - 2.A.1.2.18
TC HRGMv2_0908_2 HRGMv2_0908_2_57 63776 66136 - 9.A.8.1.6
peptidase HRGMv2_0908_2 HRGMv2_0908_2_58 66609 67508 - S09.UPW
TC HRGMv2_0908_2 HRGMv2_0908_2_59 67752 68315 + 4.A.1.2.6
pfam HRGMv2_0908_2 HRGMv2_0908_2_60 68497 69900 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0908_2 HRGMv2_0908_2_61 70160 70948 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0908_2 HRGMv2_0908_2_62 71109 72089 + 3.A.1.34.1
TC HRGMv2_0908_2 HRGMv2_0908_2_63 72293 73216 + 3.A.1.34.1
TC HRGMv2_0908_2 HRGMv2_0908_2_64 73209 74003 + 3.A.1.34.1
Gene ID: HRGMv2_0908_2_55
Type: CAZyme
Location: 60930 - 62306 (-)
Gene ID: HRGMv2_0908_2_56
Type: TC
Location: 62459 - 63655 (-)
Gene ID: HRGMv2_0908_2_57
Type: TC
Location: 63776 - 66136 (-)
Gene ID: HRGMv2_0908_2_58
Type: peptidase
Location: 66609 - 67508 (-)
Gene ID: HRGMv2_0908_2_59
Type: TC
Location: 67752 - 68315 (+)
Gene ID: HRGMv2_0908_2_60
Type: pfam
Location: 68497 - 69900 (+)
Gene ID: HRGMv2_0908_2_61
Type:
Location: 70160 - 70948 (+)
Gene ID: HRGMv2_0908_2_62
Type: TC
Location: 71109 - 72089 (+)
Gene ID: HRGMv2_0908_2_63
Type: TC
Location: 72293 - 73216 (+)
Gene ID: HRGMv2_0908_2_64
Type: TC
Location: 73209 - 74003 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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