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Cluster: HRGMv2_0906_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0906_51 HRGMv2_0906_51_5 2837 4006 - CE9
STP HRGMv2_0906_51 HRGMv2_0906_51_6 4123 5289 - SIS | SIS
TF HRGMv2_0906_51 HRGMv2_0906_51_7 5401 6135 - GntR
TC HRGMv2_0906_51 HRGMv2_0906_51_8 6223 6651 - 4.A.6.1.8
NULL(UNKNOWN) HRGMv2_0906_51 HRGMv2_0906_51_9 6733 7356 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0906_51 HRGMv2_0906_51_10 7545 8384 - 4.A.6.1.18
TC HRGMv2_0906_51 HRGMv2_0906_51_11 8374 9261 - 4.A.6.1.18
TC HRGMv2_0906_51 HRGMv2_0906_51_12 9355 9819 - 4.A.6.1.18
CAZyme HRGMv2_0906_51 HRGMv2_0906_51_13 9822 11618 - GH35
Gene ID: HRGMv2_0906_51_5
Type: CAZyme
Location: 2837 - 4006 (-)
Gene ID: HRGMv2_0906_51_6
Type: STP
Location: 4123 - 5289 (-)
Gene ID: HRGMv2_0906_51_7
Type: TF
Location: 5401 - 6135 (-)
Gene ID: HRGMv2_0906_51_8
Type: TC
Location: 6223 - 6651 (-)
Gene ID: HRGMv2_0906_51_9
Type:
Location: 6733 - 7356 (-)
Gene ID: HRGMv2_0906_51_10
Type: TC
Location: 7545 - 8384 (-)
Gene ID: HRGMv2_0906_51_11
Type: TC
Location: 8374 - 9261 (-)
Gene ID: HRGMv2_0906_51_12
Type: TC
Location: 9355 - 9819 (-)
Gene ID: HRGMv2_0906_51_13
Type: CAZyme
Location: 9822 - 11618 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0906_51_10 vegetarian > vegan 2.59000 0.01287
HRGMv2_0906_51_11 vegetarian > vegan 2.53873 0.01287
HRGMv2_0906_51_12 vegetarian > vegan 3.47456 0.01287
HRGMv2_0906_51_13 vegetarian > vegan 2.81316 0.01287

🧭 Explore Read Mapping of CGC

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